Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   ITG08_RS03145 Genome accession   NZ_CP065206
Coordinates   716272..716877 (+) Length   201 a.a.
NCBI ID   WP_010435971.1    Uniprot ID   A0AAN0LMY6
Organism   Vibrio cyclitrophicus strain ED653     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 711272..721877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ITG08_RS03125 (ITG08_03115) - 711486..712403 (-) 918 WP_016768216.1 ABC transporter ATP-binding protein -
  ITG08_RS03130 (ITG08_03120) - 712740..714371 (-) 1632 WP_016786429.1 SulP family inorganic anion transporter -
  ITG08_RS03135 (ITG08_03125) can 714658..715317 (+) 660 WP_010435977.1 carbonate dehydratase -
  ITG08_RS03140 (ITG08_03130) hpt 715404..715934 (-) 531 WP_016784912.1 hypoxanthine phosphoribosyltransferase -
  ITG08_RS03145 (ITG08_03135) opaR 716272..716877 (+) 606 WP_010435971.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  ITG08_RS03150 (ITG08_03140) lpdA 717279..718709 (-) 1431 WP_010435969.1 dihydrolipoyl dehydrogenase -
  ITG08_RS03155 (ITG08_03145) aceF 718952..720844 (-) 1893 WP_248370540.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23279.55 Da        Isoelectric Point: 6.2190

>NTDB_id=507995 ITG08_RS03145 WP_010435971.1 716272..716877(+) (opaR) [Vibrio cyclitrophicus strain ED653]
MDSISKRPRTRLSPLKRKLQLMEIALEVFSRRGIGRGGHADIADIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHAKENLHNIATEMVTLVAHDCHWLNVWFEWSASTRDEVWPLFVTTNRTNQMLLQNMFSKAIERGEVCDDHDPK
HLANLFHGICYSLFIQAKRVDTQEELSTLTDSYLNMLCIYK

Nucleotide


Download         Length: 606 bp        

>NTDB_id=507995 ITG08_RS03145 WP_010435971.1 716272..716877(+) (opaR) [Vibrio cyclitrophicus strain ED653]
ATGGACTCAATATCTAAGAGACCTAGAACTAGGCTTTCACCTTTAAAAAGAAAACTTCAATTGATGGAAATCGCACTTGA
GGTATTCTCTCGCCGCGGCATTGGCCGTGGTGGGCACGCTGATATAGCTGACATTGCTCAGGTATCAGTTGCAACCGTGT
TTAACTACTTCCCAACCCGTGAAGATCTGGTTGATGAAGTACTTAACCACGTCGTTCGCCAATTCTCTAACTTCCTTTCA
GACAATATCGATCTCGATATTCACGCAAAAGAGAACTTACATAATATTGCGACTGAAATGGTGACGTTGGTGGCTCACGA
TTGCCATTGGTTGAATGTATGGTTTGAATGGAGCGCATCAACCCGTGATGAAGTATGGCCTCTATTCGTAACCACAAACC
GCACTAACCAAATGTTACTACAAAACATGTTTAGCAAAGCGATAGAGCGTGGCGAAGTCTGTGACGACCACGACCCTAAG
CACCTTGCGAATCTGTTCCACGGCATTTGTTACTCGCTATTCATTCAAGCGAAGCGTGTAGATACGCAAGAAGAACTTTC
GACCTTGACGGATAGCTACTTAAACATGCTGTGCATTTATAAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

82.5

99.502

0.821
  hapR Vibrio cholerae C6706

74.372

99.005

0.736
  hapR Vibrio cholerae strain A1552

74.372

99.005

0.736