Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   I2439_RS02255 Genome accession   NZ_CP065191
Coordinates   452315..453349 (+) Length   344 a.a.
NCBI ID   WP_196819877.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ46     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 447315..458349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I2439_RS02225 (HIEAAJJG_00441) - 447534..448061 (+) 528 WP_196819873.1 GNAT family N-acetyltransferase -
  I2439_RS02230 (HIEAAJJG_00442) - 448062..449324 (+) 1263 WP_196819874.1 LCP family protein -
  I2439_RS02235 (HIEAAJJG_00443) - 449490..449792 (-) 303 WP_196819875.1 chemotaxis protein -
  I2439_RS02240 (HIEAAJJG_00444) - 449789..450208 (-) 420 WP_111677795.1 HIT family protein -
  I2439_RS02245 (HIEAAJJG_00445) - 450660..451046 (-) 387 WP_196819876.1 hypothetical protein -
  I2439_RS02250 (HIEAAJJG_00446) pptA 451586..452311 (+) 726 WP_043038646.1 ABC transporter ATP-binding protein Regulator
  I2439_RS02255 (HIEAAJJG_00447) pptB 452315..453349 (+) 1035 WP_196819877.1 ABC transporter permease Regulator
  I2439_RS02260 (HIEAAJJG_00448) - 453412..454203 (+) 792 WP_012515084.1 phosphotransferase family protein -
  I2439_RS02265 (HIEAAJJG_00449) trmB 454203..454838 (+) 636 WP_111677797.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  I2439_RS02275 (HIEAAJJG_00451) - 455454..455969 (-) 516 WP_021320424.1 hypothetical protein -
  I2439_RS02280 (HIEAAJJG_00452) - 456761..458158 (-) 1398 WP_196819855.1 ISNCY-like element ISSeq2 family transposase -

Sequence


Protein


Download         Length: 344 a.a.        Molecular weight: 39817.00 Da        Isoelectric Point: 10.6288

>NTDB_id=507814 I2439_RS02255 WP_196819877.1 452315..453349(+) (pptB) [Streptococcus equi subsp. zooepidemicus strain SEZ46]
MKALFRKRRQEFQHKHAKYLPYVFNDHFVLVLLFLLGFILFQYSQLLKHFPANPLPIQLGLLIAVLFLLNLGSVATYLER
ADQHFLLTKEAEVIAHIRSAERLSFILWSSLQTVLLLLLFPLFQRLGVSLLAFVLLIGVLVLAKRLLLKRKVVSFLSSKG
LDWEKAIAFEADRQQAILKFYALFTNVKGISTKVKERPYLNPILKLVKADSKKVWTNLYLRAFLRSSDYLGLFLRLLLLS
SLALAFISNPYLAVGLALVFHYLSLFQLLSLYHHYDYHYMSGLYPTKPQHKQRNLLSLLRQLSGLMLIVNLVLCRSWQNA
LVLIVAMGLLNLLYLPYKLKKMID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=507814 I2439_RS02255 WP_196819877.1 452315..453349(+) (pptB) [Streptococcus equi subsp. zooepidemicus strain SEZ46]
ATGAAGGCATTATTTCGTAAGCGTCGTCAGGAATTTCAGCACAAGCATGCTAAGTATCTTCCTTATGTCTTTAATGATCA
TTTTGTCCTTGTCTTGCTGTTTCTTTTGGGCTTTATTCTTTTTCAGTACAGTCAACTGCTCAAGCATTTTCCTGCTAATC
CTCTACCGATTCAGCTAGGCTTGTTGATTGCTGTCTTGTTTTTGCTTAATCTGGGGTCTGTTGCCACTTATCTTGAAAGG
GCTGATCAGCATTTTTTGCTGACCAAAGAGGCAGAAGTTATTGCCCACATCAGGTCAGCAGAGCGCTTGTCCTTTATTCT
TTGGTCAAGCCTTCAAACGGTCTTGCTGCTGCTTTTATTTCCTTTGTTTCAAAGGCTTGGTGTTTCCTTGCTTGCCTTTG
TGCTATTGATTGGTGTTCTAGTGCTGGCTAAGCGCTTACTGTTAAAGCGTAAGGTGGTAAGCTTTTTGAGCTCCAAGGGG
CTTGATTGGGAAAAAGCGATTGCTTTTGAGGCAGATCGTCAGCAGGCCATTTTAAAGTTTTATGCTTTGTTTACAAATGT
CAAAGGAATCTCAACCAAGGTTAAGGAAAGGCCTTACTTAAACCCTATACTTAAGCTTGTCAAGGCAGATAGCAAAAAGG
TTTGGACAAACCTATATTTAAGGGCATTTTTACGAAGTTCTGATTATTTAGGGCTATTTTTACGTCTGCTCTTGCTTAGC
TCTTTAGCTCTTGCCTTTATTTCCAACCCTTACTTAGCAGTAGGCTTGGCCTTGGTCTTTCATTATTTAAGTCTTTTTCA
GTTATTATCACTTTACCATCATTACGATTACCATTATATGAGTGGGCTTTACCCGACCAAACCACAGCACAAGCAAAGGA
ATCTGCTTTCTTTGTTGAGACAATTAAGTGGTTTGATGCTTATCGTCAATCTTGTGCTCTGCCGTTCTTGGCAAAATGCT
CTTGTGTTGATTGTGGCGATGGGATTATTAAATCTTCTTTACTTACCGTACAAGTTAAAGAAGATGATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

48.256

100

0.483

  pptB Streptococcus salivarius strain HSISS4

47.674

100

0.477