Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   SANR_RS07855 Genome accession   NC_022239
Coordinates   1617983..1619641 (-) Length   552 a.a.
NCBI ID   WP_020999768.1    Uniprot ID   -
Organism   Streptococcus anginosus C238     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1612983..1624641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SANR_RS07830 (SANR_1517) ceuB 1613483..1614436 (+) 954 WP_003035980.1 ABC transporter permease Machinery gene
  SANR_RS07835 (SANR_1518) - 1614429..1615391 (+) 963 WP_003036017.1 iron chelate uptake ABC transporter family permease subunit -
  SANR_RS07840 (SANR_1519) - 1615393..1616145 (+) 753 WP_003036288.1 ABC transporter ATP-binding protein -
  SANR_RS07845 (SANR_1520) - 1616168..1617142 (+) 975 WP_003036100.1 siderophore ABC transporter substrate-binding protein -
  SANR_RS07850 (SANR_1521) - 1617205..1617936 (-) 732 WP_003036167.1 metallophosphoesterase -
  SANR_RS07855 (SANR_1522) recN 1617983..1619641 (-) 1659 WP_020999768.1 DNA repair protein RecN Machinery gene
  SANR_RS07860 (SANR_1523) - 1619649..1620080 (-) 432 WP_003036184.1 arginine repressor -
  SANR_RS07865 (SANR_1524) - 1620073..1620888 (-) 816 WP_003036049.1 TlyA family RNA methyltransferase -
  SANR_RS07870 (SANR_1525) - 1620854..1621756 (-) 903 WP_003035941.1 polyprenyl synthetase family protein -
  SANR_RS07875 (SANR_1526) - 1621753..1621965 (-) 213 WP_003036121.1 exodeoxyribonuclease VII small subunit -
  SANR_RS07880 (SANR_1527) xseA 1621943..1623283 (-) 1341 WP_003036002.1 exodeoxyribonuclease VII large subunit -
  SANR_RS12115 - 1623411..1623605 (-) 195 WP_025271676.1 TraX family protein -
  SANR_RS07890 (SANR_1528) - 1623606..1624217 (-) 612 WP_003035977.1 TraX family protein -

Sequence

Protein


Download         Length: 552 a.a.        Molecular weight: 62228.43 Da        Isoelectric Point: 4.5183

>NTDB_id=50761 SANR_RS07855 WP_020999768.1 1617983..1619641(-) (recN) [Streptococcus anginosus C238]
MLLEISIKNFAIIEEISLNFEQGMTVLTGETGAGKSIIIDAMNMMLGSRATTDVIRHGASKAEIEGLFAIEQSKALVEIF
EQQGLDMTEELIIRREIFQNGRSVSRINGQMVNLSVLRAVGQHLVDIHGQHDQEELMRPQLHIAMLDEFGADAFFKLKAD
YQQTFDQYRQLRKQVLTIQKNQEENKARIDMLEYQIAEIEAANLKAGEDLALNQERDKLLNHKQIADTLTNAYAMLDDEE
FSSLANVRSAMNDMEAIEDYDATYKEIATNLSESYYVLEDVTKRLEDILEDLDFDGGRLLEVESRLDLIYSITRKYGGQV
DDVLAYFEQISKEYALLTGKNLSSDDLDKELKKLEKSLVSLASSLSQARHELAQQLEAEIQQELQDLYMEKANFQVQFTK
GKFSREGNEHVEFYISTNPGEDYKPLVKVASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
SNGQVLAISHLPQVIAIADYQFFIEKISDEHSTVSTVRLLSDEERVEEIAKMLAGENVTQAALTQARELLKK

Nucleotide


Download         Length: 1659 bp        

>NTDB_id=50761 SANR_RS07855 WP_020999768.1 1617983..1619641(-) (recN) [Streptococcus anginosus C238]
ATGTTACTTGAAATTTCCATTAAAAATTTTGCAATTATTGAAGAGATTTCCCTCAATTTTGAGCAAGGCATGACCGTTTT
GACAGGTGAAACAGGGGCCGGAAAGTCTATTATCATTGATGCTATGAACATGATGCTAGGAAGCCGCGCAACAACAGATG
TGATTCGTCACGGTGCATCAAAAGCAGAGATTGAAGGGCTTTTTGCAATTGAGCAGAGTAAGGCTTTGGTTGAAATCTTT
GAGCAGCAAGGACTTGATATGACAGAGGAGCTGATTATTCGGCGGGAAATTTTTCAAAATGGGCGTAGTGTCAGTCGTAT
TAATGGTCAAATGGTTAATTTGTCTGTCTTGCGAGCTGTTGGACAGCATTTGGTGGATATTCACGGTCAACACGATCAAG
AAGAACTCATGCGACCGCAGCTGCATATTGCCATGTTGGACGAGTTTGGAGCTGACGCATTTTTCAAGCTCAAAGCTGAT
TATCAACAGACTTTTGACCAGTATCGTCAGTTGCGTAAGCAGGTCTTAACAATTCAAAAGAATCAAGAAGAAAATAAAGC
GCGGATTGACATGCTGGAATATCAAATTGCAGAGATTGAAGCAGCTAATTTAAAAGCAGGTGAAGATTTAGCTTTAAATC
AAGAACGTGATAAGTTGCTCAATCATAAGCAGATTGCGGACACTTTGACCAATGCTTATGCCATGCTGGATGATGAAGAA
TTTTCTAGTTTAGCGAATGTTCGTTCTGCCATGAATGACATGGAAGCTATTGAAGACTATGACGCCACTTACAAAGAAAT
TGCGACCAACCTTTCTGAATCTTACTATGTGTTGGAAGATGTGACAAAGCGTTTGGAGGATATTCTAGAAGACTTGGATT
TTGATGGTGGCCGTCTCTTAGAAGTAGAAAGTCGCCTAGATTTAATCTATAGTATTACTCGCAAATACGGTGGTCAAGTA
GATGATGTCCTAGCTTACTTTGAGCAGATTTCTAAAGAATATGCTCTACTTACTGGGAAAAATCTTTCATCAGATGATTT
GGACAAAGAGCTGAAAAAGCTGGAAAAAAGCTTGGTTTCTCTAGCAAGCAGTCTTAGTCAGGCTCGGCACGAATTAGCCC
AGCAGTTAGAAGCAGAGATTCAGCAAGAACTGCAAGACCTCTATATGGAAAAGGCGAATTTTCAAGTTCAATTTACCAAG
GGAAAATTTAGTCGTGAAGGAAATGAACACGTTGAATTTTATATTTCGACCAATCCCGGTGAAGATTACAAACCGCTCGT
TAAGGTTGCTTCAGGTGGTGAATTGTCTCGTTTGATGTTGGCAATCAAGTCCGCTTTTTCTCGTAAGGAAGGCAAGACCA
GCATTGTCTTTGATGAGGTGGATACGGGCGTATCGGGACGTGTTGCGCAAGCTATTGCCCAAAAGATTCATAAGATTGGC
TCAAACGGACAGGTCCTTGCCATCTCGCACTTACCTCAAGTGATTGCAATCGCGGATTATCAATTTTTCATTGAAAAAAT
ATCTGATGAGCATTCGACCGTTTCAACTGTTCGCTTGTTATCAGATGAGGAGCGTGTCGAAGAAATTGCCAAAATGTTGG
CGGGCGAAAATGTGACCCAAGCAGCCCTCACGCAGGCTAGAGAGCTCTTGAAAAAATGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

44.211

100

0.457

Multiple sequence alignment