Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   BTD91_RS09125 Genome accession   NZ_CP065150
Coordinates   2025439..2026044 (-) Length   201 a.a.
NCBI ID   WP_032547912.1    Uniprot ID   A0A120DGB0
Organism   Vibrio kanaloae strain R17     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2020439..2031044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTD91_RS09115 (BTD91_09115) aceF 2021702..2023573 (+) 1872 WP_017056617.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  BTD91_RS09120 (BTD91_09120) lpdA 2023816..2025246 (+) 1431 WP_017056618.1 dihydrolipoyl dehydrogenase -
  BTD91_RS09125 (BTD91_09125) opaR 2025439..2026044 (-) 606 WP_032547912.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  BTD91_RS09130 (BTD91_09130) hpt 2026380..2026910 (+) 531 WP_017056620.1 hypoxanthine phosphoribosyltransferase -
  BTD91_RS09135 (BTD91_09135) can 2027015..2027674 (-) 660 WP_017056621.1 carbonate dehydratase -
  BTD91_RS09140 (BTD91_09140) - 2027961..2029592 (+) 1632 WP_017056622.1 SulP family inorganic anion transporter -
  BTD91_RS09145 (BTD91_09145) - 2029898..2030815 (+) 918 WP_017056623.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23333.58 Da        Isoelectric Point: 6.2928

>NTDB_id=507440 BTD91_RS09125 WP_032547912.1 2025439..2026044(-) (opaR) [Vibrio kanaloae strain R17]
MDSISKRPRTRLSPLKRKLQLMEIALEVFSRRGIGRGGHADIADIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHAKKNLHNIATEMVNLVAQDSHWLNVWFEWSASTRDEVWPLFVTTNRTNQMLLQNMFSKAIERGDVCDEHDPK
HLANLFHGICYSLFIQAKRLETPEEQENLTDSYLNMLCIYK

Nucleotide


Download         Length: 606 bp        

>NTDB_id=507440 BTD91_RS09125 WP_032547912.1 2025439..2026044(-) (opaR) [Vibrio kanaloae strain R17]
ATGGACTCAATATCTAAGAGGCCTAGAACTAGGCTTTCACCCTTAAAAAGAAAACTTCAATTGATGGAAATCGCACTTGA
GGTATTCTCTCGCCGCGGCATTGGCCGAGGTGGCCACGCAGATATCGCTGATATTGCTCAGGTGTCTGTAGCAACCGTAT
TTAACTACTTCCCTACCCGAGAAGATCTGGTTGATGAAGTACTGAATCATGTCGTACGCCAATTCTCTAACTTCCTTTCA
GATAATATCGATCTCGATATTCACGCGAAAAAAAATCTACATAATATTGCCACTGAAATGGTGAACTTAGTGGCTCAAGA
TAGCCATTGGCTGAATGTTTGGTTCGAGTGGAGCGCATCAACTCGTGATGAAGTATGGCCTTTATTTGTCACAACCAACC
GCACTAACCAAATGTTATTACAAAATATGTTTAGTAAGGCGATTGAGCGTGGAGATGTGTGTGATGAGCATGATCCTAAG
CATCTTGCGAACCTATTTCACGGCATCTGCTACTCGTTATTCATTCAAGCAAAACGTCTCGAAACACCAGAAGAGCAAGA
AAACTTAACAGACAGCTACTTAAACATGTTGTGTATTTATAAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A120DGB0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

81

99.502

0.806
  hapR Vibrio cholerae C6706

73.367

99.005

0.726
  hapR Vibrio cholerae strain A1552

73.367

99.005

0.726