Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   IRJ20_RS11550 Genome accession   NZ_CP065137
Coordinates   2282022..2282420 (-) Length   132 a.a.
NCBI ID   WP_039252825.1    Uniprot ID   -
Organism   Bacillus sp. A1(2020)     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2277022..2287420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ20_RS11525 - 2277194..2278396 (+) 1203 WP_015239124.1 GTP-binding protein -
  IRJ20_RS11530 - 2278461..2279597 (+) 1137 WP_242750290.1 zinc-dependent alcohol dehydrogenase -
  IRJ20_RS11535 - 2279612..2280046 (+) 435 WP_012116767.1 RDD family protein -
  IRJ20_RS11540 - 2280118..2280441 (+) 324 WP_007409357.1 YckD family protein -
  IRJ20_RS11545 - 2280545..2281981 (+) 1437 WP_098080961.1 family 1 glycosylhydrolase -
  IRJ20_RS11550 nin/comJ 2282022..2282420 (-) 399 WP_039252825.1 competence protein ComJ Regulator
  IRJ20_RS11555 nucA/comI 2282441..2282878 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  IRJ20_RS11560 hxlB 2283236..2283793 (-) 558 WP_039252823.1 6-phospho-3-hexuloisomerase -
  IRJ20_RS11565 hxlA 2283790..2284425 (-) 636 WP_015416785.1 3-hexulose-6-phosphate synthase -
  IRJ20_RS11570 - 2284657..2285019 (+) 363 WP_014304320.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14993.97 Da        Isoelectric Point: 4.9712

>NTDB_id=507236 IRJ20_RS11550 WP_039252825.1 2282022..2282420(-) (nin/comJ) [Bacillus sp. A1(2020)]
MNKSWKPQELAISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADGAVSFEARRNTRAFIVLRLNTSEPVPSYEKKATVPF
EAVKDGIEIESVMSKRLFFHIPKGRYSLTCYSVPAEISDLHADTYIIDAASM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=507236 IRJ20_RS11550 WP_039252825.1 2282022..2282420(-) (nin/comJ) [Bacillus sp. A1(2020)]
TTGAATAAATCATGGAAACCGCAAGAACTGGCCATTTCTTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCCATTGAAAAAGGATATGCGGAAGCTGACGGAGCTGTTTCATTTGAGGCAAGGAGAA
ATACGAGGGCATTTATCGTCCTCAGGCTTAACACAAGTGAACCGGTACCATCCTATGAGAAAAAAGCGACTGTTCCCTTT
GAGGCTGTAAAAGATGGAATTGAGATTGAAAGCGTGATGTCAAAGCGGCTTTTCTTTCATATTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCGGATACGTATATTATTGATGCAGCCTCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

75.758

100

0.758