Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   IRJ20_RS01715 Genome accession   NZ_CP065137
Coordinates   341411..342211 (-) Length   266 a.a.
NCBI ID   WP_003153177.1    Uniprot ID   I2C7K5
Organism   Bacillus sp. A1(2020)     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 336411..347211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ20_RS01685 - 336957..337589 (+) 633 WP_007408365.1 helix-turn-helix domain-containing protein -
  IRJ20_RS01690 - 337880..338017 (+) 138 WP_014470646.1 hypothetical protein -
  IRJ20_RS01695 - 338111..339229 (+) 1119 WP_242750528.1 NADH-dependent flavin oxidoreductase -
  IRJ20_RS01700 - 339355..339567 (+) 213 WP_186314433.1 spore germination protein -
  IRJ20_RS01705 - 339693..339905 (+) 213 WP_003153181.1 spore germination protein -
  IRJ20_RS01710 alr 340081..341262 (+) 1182 WP_242750407.1 alanine racemase -
  IRJ20_RS01715 spo0A 341411..342211 (-) 801 WP_003153177.1 sporulation transcription factor Spo0A Regulator
  IRJ20_RS01720 spoIVB 342492..343772 (-) 1281 WP_033574141.1 SpoIVB peptidase -
  IRJ20_RS01725 recN 343936..345666 (-) 1731 WP_242750409.1 DNA repair protein RecN Machinery gene
  IRJ20_RS01730 argR 345698..346147 (-) 450 WP_003153173.1 transcriptional regulator ArgR -
  IRJ20_RS01735 - 346244..347089 (-) 846 WP_007612503.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29630.11 Da        Isoelectric Point: 6.1630

>NTDB_id=507190 IRJ20_RS01715 WP_003153177.1 341411..342211(-) (spo0A) [Bacillus sp. A1(2020)]
MEKIKVCVADDNRELVSLLSEYIEGQDDMEVIGVAYNGQECLSLFKDKNPDVLVLDIIMPHLDGLAVLERLRESELEKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNVSSVTHRAPSAQSSIIRSQPEPKRKNLDASITSII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=507190 IRJ20_RS01715 WP_003153177.1 341411..342211(-) (spo0A) [Bacillus sp. A1(2020)]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTTGTAAGCCTGTTGAGTGAATATATAGAGGGACAGGA
TGATATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGTCTTTCTTTGTTTAAAGATAAGAATCCAGATGTGCTCG
TTTTAGACATTATCATGCCGCATCTGGACGGACTTGCGGTTTTGGAGCGTCTGCGGGAATCAGAGCTCGAGAAGCAGCCG
AACGTCATCATGCTGACGGCATTCGGTCAGGAAGACGTTACGAAAAAAGCCGTCGATTTAGGCGCGTCCTATTTCATCCT
GAAGCCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTAAGCGGAAATGTCAGCAGTGTCACACACCGTGCGC
CGTCTGCGCAAAGCAGCATTATCCGCAGCCAGCCTGAGCCGAAGCGGAAAAATCTCGATGCCAGCATTACAAGCATTATC
CATGAGATCGGTGTGCCTGCCCATATCAAAGGCTATCTTTATTTGCGTGAAGCCATTTCCATGGTGTATAACGATATTGA
ACTCCTCGGCAGCATCACAAAAGTCCTTTATCCCGACATCGCCAAAAAATTCAACACGACCGCAAGCCGTGTAGAACGGG
CCATCCGCCACGCCATTGAAGTCGCATGGAGCAGGGGAAATATTGATTCCATTTCTTCACTGTTCGGATATACGGTAAGC
ATGACAAAAGCAAAGCCAACCAATTCAGAGTTCATCGCGATGGTTGCTGACAAGCTGAGATTGGAGCATAAAGCTTCGTA
A

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C7K5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

96.629

100

0.97