Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   IRJ20_RS01725 Genome accession   NZ_CP065137
Coordinates   343936..345666 (-) Length   576 a.a.
NCBI ID   WP_242750409.1    Uniprot ID   -
Organism   Bacillus sp. A1(2020)     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 338936..350666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ20_RS01700 - 339355..339567 (+) 213 WP_186314433.1 spore germination protein -
  IRJ20_RS01705 - 339693..339905 (+) 213 WP_003153181.1 spore germination protein -
  IRJ20_RS01710 alr 340081..341262 (+) 1182 WP_242750407.1 alanine racemase -
  IRJ20_RS01715 spo0A 341411..342211 (-) 801 WP_003153177.1 sporulation transcription factor Spo0A Regulator
  IRJ20_RS01720 spoIVB 342492..343772 (-) 1281 WP_033574141.1 SpoIVB peptidase -
  IRJ20_RS01725 recN 343936..345666 (-) 1731 WP_242750409.1 DNA repair protein RecN Machinery gene
  IRJ20_RS01730 argR 345698..346147 (-) 450 WP_003153173.1 transcriptional regulator ArgR -
  IRJ20_RS01735 - 346244..347089 (-) 846 WP_007612503.1 TlyA family RNA methyltransferase -
  IRJ20_RS01740 dxs 347086..348987 (-) 1902 WP_012117963.1 1-deoxy-D-xylulose-5-phosphate synthase -
  IRJ20_RS01745 - 349131..350021 (-) 891 WP_007408353.1 polyprenyl synthetase family protein -
  IRJ20_RS01750 - 350011..350265 (-) 255 WP_007408352.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64080.96 Da        Isoelectric Point: 4.7930

>NTDB_id=507191 IRJ20_RS01725 WP_242750409.1 343936..345666(-) (recN) [Bacillus sp. A1(2020)]
MLAELSIKNFAIIEELTISFERGLTVLTGETGAGKSIIIDAVSLLVGGRGSSEFVRYGETKAELEGLFLLDSGHPVFEVC
REQGIDASDDMIVMRRDINAGGKSVCRVNGKLVTIAALREIGRLLLDIHGQHDNQLLMEDDKHLELLDRFAGAEAESALQ
AYHEGYERYMKLLKKVKKLSESEQEMAHRLDLIQFQLEEIESAKLELNEDELLQEERKQISNFEKIYESLQNAYNALRSE
QGGLDWVGMASAQLEDISDINEPLQKLSESVSSSYYLLEDATFQMRNLLDDMEYDPERLNFIETRLNEIKQLKRKYGATV
EDILEYGSKIEEEIDQIENRDSHLEALKKELEAVGKDVAVEAANLSKIRKAWAKKLAEAIHQELKSLYMGKSTFDTEFLV
KTDPSASEAPVVNGQPVQLTQKGIDLVKFLISTNTGEPLKPLSKVASGGELSRVMLAMKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSTGSQVLCITHLPQVAAMADTHLLIAKEFKNGRTTTHVTPLSKQDKVAEIGRMIAGVEVTDLTKR
HAQELLKQAGQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=507191 IRJ20_RS01725 WP_242750409.1 343936..345666(-) (recN) [Bacillus sp. A1(2020)]
TTGTTAGCTGAACTATCAATAAAAAACTTTGCCATTATAGAGGAACTGACGATTTCGTTTGAACGGGGGCTCACCGTCCT
GACGGGAGAAACAGGGGCCGGCAAGTCAATTATTATAGACGCCGTTTCCCTATTAGTCGGCGGCCGCGGCTCGTCTGAAT
TTGTCCGTTACGGTGAAACAAAGGCCGAGCTTGAAGGACTGTTTCTTTTGGACAGCGGTCATCCCGTTTTTGAAGTATGC
CGTGAGCAGGGAATAGACGCATCTGACGACATGATTGTCATGAGAAGGGACATTAATGCCGGAGGAAAAAGCGTCTGCCG
TGTCAACGGAAAATTAGTGACGATTGCGGCTTTGAGGGAAATCGGCAGACTTTTATTAGATATTCACGGACAGCATGATA
ACCAGCTGTTAATGGAGGACGATAAACACTTAGAGCTGTTGGACAGGTTTGCGGGTGCTGAGGCCGAATCCGCGCTTCAG
GCTTACCATGAAGGCTATGAGCGTTATATGAAACTGCTCAAAAAAGTGAAGAAGCTGTCAGAAAGCGAGCAGGAAATGGC
GCATCGGTTAGACCTGATTCAATTTCAGCTTGAAGAAATCGAGTCGGCGAAGCTTGAATTGAATGAAGACGAGCTTCTTC
AGGAAGAGCGGAAGCAGATATCCAACTTTGAAAAAATTTATGAATCATTGCAAAACGCCTATAATGCGCTCCGCAGTGAG
CAGGGGGGGCTTGACTGGGTCGGAATGGCCTCTGCCCAGCTTGAAGATATTTCGGATATCAATGAACCGCTGCAAAAGCT
GTCTGAAAGTGTGTCAAGTTCCTATTATCTGTTGGAGGATGCAACCTTTCAGATGCGCAATCTGTTAGATGATATGGAAT
ATGACCCGGAACGGCTGAATTTTATTGAAACCCGTTTAAACGAGATCAAACAGCTGAAGCGCAAATACGGAGCGACGGTA
GAAGACATTTTGGAATACGGCTCCAAAATAGAAGAGGAAATCGATCAAATCGAGAACCGCGACAGCCACCTTGAAGCGCT
GAAGAAGGAATTGGAGGCGGTCGGCAAAGATGTGGCCGTAGAAGCCGCCAATTTATCAAAAATCAGAAAAGCATGGGCCA
AAAAGCTGGCGGAAGCGATTCATCAGGAATTAAAAAGTCTGTATATGGGCAAATCAACGTTTGATACGGAGTTTCTCGTG
AAAACCGATCCGTCAGCCAGTGAAGCACCGGTTGTTAACGGGCAGCCCGTGCAGCTTACCCAAAAGGGGATTGACCTTGT
GAAGTTTTTAATTTCAACAAACACCGGTGAACCTTTAAAACCGCTGTCAAAGGTCGCTTCCGGAGGCGAGCTTTCAAGGG
TGATGCTGGCGATGAAAAGTATTTTTTCTTCCCAGCAGGATGTCACCTCCATCATCTTCGACGAAGTGGACACCGGTGTA
AGCGGGCGGGTTGCCCAAGCCATCGCGGAAAAAATCCATAAAGTATCTACCGGTTCACAGGTGCTCTGCATTACACACCT
GCCTCAGGTTGCCGCCATGGCGGATACGCACCTTCTGATCGCAAAAGAATTCAAAAACGGCCGGACGACAACGCATGTCA
CGCCGCTTTCCAAACAGGACAAGGTAGCGGAAATCGGCCGCATGATTGCGGGTGTTGAAGTGACCGATCTGACAAAACGG
CATGCACAAGAGCTTTTAAAACAGGCCGGACAGGTAAAAACGACAGGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

88.194

100

0.882