Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   KTE14_RS08265 Genome accession   NZ_CP077738
Coordinates   1701883..1702380 (-) Length   165 a.a.
NCBI ID   WP_001825340.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UMCG578     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1696883..1707380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KTE14_RS08240 (KTE14_08175) gcvPA 1697177..1698523 (-) 1347 WP_000019698.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  KTE14_RS08245 (KTE14_08180) gcvT 1698543..1699634 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  KTE14_RS08250 (KTE14_08185) - 1699793..1700317 (-) 525 WP_001015120.1 shikimate kinase -
  KTE14_RS08255 (KTE14_08190) - 1700307..1700453 (-) 147 WP_001789879.1 hypothetical protein -
  KTE14_RS08260 (KTE14_08195) - 1700520..1701692 (-) 1173 WP_000195429.1 IS256-like element IS256 family transposase -
  KTE14_RS08265 (KTE14_08200) comGF 1701883..1702380 (-) 498 WP_001825340.1 competence type IV pilus minor pilin ComGF Machinery gene
  KTE14_RS08270 (KTE14_08205) comGE 1702298..1702597 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  KTE14_RS08275 (KTE14_08210) comGD 1702584..1703030 (-) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  KTE14_RS08280 (KTE14_08215) comGC 1703008..1703319 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  KTE14_RS08285 (KTE14_08220) comGB 1703333..1704403 (-) 1071 WP_000776425.1 competence type IV pilus assembly protein ComGB Machinery gene
  KTE14_RS08290 (KTE14_08225) comGA 1704375..1705349 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  KTE14_RS08295 (KTE14_08230) - 1705401..1706024 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  KTE14_RS08300 (KTE14_08235) - 1706021..1706350 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  KTE14_RS08305 (KTE14_08240) - 1706350..1707336 (-) 987 WP_000161315.1 ROK family glucokinase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19179.92 Da        Isoelectric Point: 10.2192

>NTDB_id=506966 KTE14_RS08265 WP_001825340.1 1701883..1702380(-) (comGF) [Staphylococcus aureus strain UMCG578]
MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISITLLIVPDLIRLSKTFLIESRELTTVDFEFFSRDI
LEDFKGVDRNDIEIRQQRIILHKGEEMIEYKLINNKIIKVVNDRGNITLINNVTAFTANIYYKSIIKITITVKVGTNLQT
KTIYV

Nucleotide


Download         Length: 498 bp        

>NTDB_id=506966 KTE14_RS08265 WP_001825340.1 1701883..1702380(-) (comGF) [Staphylococcus aureus strain UMCG578]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTTATTGAAATGTTAGTAGCGATGATGGTTATAAGCATAACTTTACTAATTGTTCCAGACT
TAATTAGACTTAGCAAAACTTTTCTAATTGAAAGTAGGGAATTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGAGGATTTTAAAGGTGTAGATAGAAACGATATTGAAATTAGGCAACAGCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATAAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACATTGATTAATAATGTTA
CAGCATTTACTGCAAATATCTACTATAAATCTATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATCTGCAGACT
AAAACTATTTATGTATAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)

Putative Competence protein ComGF (ComGF)

(68-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus N315

98.182

100

0.982
  comGF Staphylococcus aureus MW2

96.97

100

0.97