Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   KQY30_RS14825 Genome accession   NZ_CP077658
Coordinates   3522385..3523794 (+) Length   469 a.a.
NCBI ID   WP_217307219.1    Uniprot ID   -
Organism   Streptomyces sp. GMY02     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3517385..3528794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQY30_RS14810 (KQY30_14810) - 3518284..3519219 (-) 936 WP_217307216.1 Ppx/GppA phosphatase family protein -
  KQY30_RS14815 (KQY30_14815) - 3519260..3520099 (+) 840 WP_217307217.1 hypothetical protein -
  KQY30_RS14820 (KQY30_14820) - 3520254..3522184 (-) 1931 Protein_2978 hypothetical protein -
  KQY30_RS14825 (KQY30_14825) radA/sms 3522385..3523794 (+) 1410 WP_217307219.1 DNA repair protein RadA Machinery gene
  KQY30_RS14830 (KQY30_14830) disA 3523839..3524963 (+) 1125 WP_046507681.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  KQY30_RS14835 (KQY30_14835) - 3525216..3526169 (-) 954 WP_217307220.1 hypothetical protein -
  KQY30_RS14840 (KQY30_14840) - 3526537..3527553 (+) 1017 WP_254407130.1 A/G-specific adenine glycosylase -
  KQY30_RS14845 (KQY30_14845) - 3527757..3528452 (+) 696 WP_217307221.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49357.58 Da        Isoelectric Point: 8.2591

>NTDB_id=506782 KQY30_RS14825 WP_217307219.1 3522385..3523794(+) (radA/sms) [Streptomyces sp. GMY02]
MAARTKTAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEYGAPAVRTTSAGRVSTAALPIGEVDVRTATARSTGVAEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAAGAEHRTLYVTGEESASQVRLRADRIKAIHDHLYLAAETDLSAVL
GHLDAVKPSLLVLDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMATLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRFGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTQALVPTDPGKVPAGMKVIEVADMGDALRVLPRRGRADAPREDNARR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=506782 KQY30_RS14825 WP_217307219.1 3522385..3523794(+) (radA/sms) [Streptomyces sp. GMY02]
ATGGCTGCCCGTACGAAGACCGCCAAGGACCGGCCGTCCTACCGCTGTACCGAATGCGGCTGGACGACCGCCAAATGGCT
CGGCCGCTGCCCCGAATGCCAGGCCTGGGGCACGGTCGAGGAGTACGGCGCGCCCGCGGTACGGACCACCTCGGCCGGCC
GTGTCTCCACCGCCGCGCTCCCGATCGGCGAGGTCGACGTCCGTACGGCCACCGCGCGCTCCACCGGGGTGGCCGAGTTG
GACCGGGTGCTCGGCGGCGGGCTGGTCCCCGGCGCCGTCGTGCTGCTGGCGGGCGAGCCGGGTGTGGGCAAGTCCACGCT
GCTGCTCGATGTCGCGGCGAAGGCGGCCGGCGCGGAGCACCGCACCCTCTATGTGACGGGCGAGGAGTCGGCCAGTCAGG
TGCGGCTGCGCGCGGACCGGATCAAGGCCATCCACGACCATCTCTATCTCGCCGCCGAGACCGATCTCTCCGCGGTCCTC
GGCCATCTCGACGCGGTCAAGCCCTCGCTGCTCGTGCTGGACTCCGTACAGACCGTGGCCTCGCCGGAGATCGACGGCGC
GCCGGGCGGAATGGCCCAGGTCAGGGAGGTCGCGGGCGCGCTCATCCGGGCCTCCAAGGAGCGCGGCATGGCCACCCTGC
TGGTGGGCCATGTCACCAAGGACGGCGCGATCGCCGGCCCGAGGCTGCTCGAACACCTGGTGGATGTGGTGCTGTCGTTC
GAGGGCGACCGGCACGCCCGGCTGCGGCTGGTGCGCGGGGTGAAGAACCGCTTCGGGGCCACCGACGAGGTCGGCTGTTT
CGAACTGCACGACGAGGGGATCACCGGCCTCGCCGATCCGTCGGGCCTCTTCCTCACCCGGCGCGACGAGCCCGTACCGG
GCACCTGCCTCACCGTCACCCTCGAAGGCCGCCGCCCGCTCGTCGCCGAGGTGCAGGCGCTGACCGTCGACTCGCAGATC
CCCTCGCCCCGGCGCACCACCTCGGGCCTGGAGACCTCGCGGGTCTCGATGATGCTCGCCGTGCTGGAGCAGCGCGGCCG
GATCAGCGCGCTCGGCAAGCGGGACATCTACAGCGCGACGGTCGGCGGGGTGAAGCTCTCCGAGCCCGCCGCCGATCTGG
CGATCGCCCTCGCGCTGGCCTCCGCCGCCAGCGACACCCCGCTGCCGAAGAACCTGGTCGCGATCGGCGAAGTGGGCCTC
GCGGGCGAGGTGAGACGGGTCACGGGCGTGCAGCGCCGGCTCGCGGAGGCACACCGGCTCGGCTTCACGCAGGCCCTTGT
TCCGACCGATCCAGGGAAGGTCCCCGCCGGTATGAAGGTCATAGAAGTCGCCGACATGGGCGATGCTCTCAGGGTGCTGC
CGCGCCGGGGTCGTGCGGACGCCCCACGGGAGGACAACGCTCGCCGGTAG

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

AAA domain (AAA_25)

(80-222)

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

44.15

96.588

0.426
  radA Streptococcus mitis SK321

43.077

97.015

0.418
  radA Streptococcus pneumoniae D39

43.142

96.375

0.416
  radA Streptococcus pneumoniae TIGR4

43.142

96.375

0.416
  radA Streptococcus mitis NCTC 12261

43.142

96.375

0.416
  radA Streptococcus pneumoniae R6

43.142

96.375

0.416
  radA Streptococcus pneumoniae Rx1

43.142

96.375

0.416