Detailed information NTG0050678

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: SCI_RS09890
• Genome accession: NC_022238
• Coordinates: 1975020..1976117 (+)
• Length: 365 a.a.
• NCBI ID: WP_020998128.1
• Uniprot ID: -
• Organism: Streptococcus constellatus subsp. pharyngis C1050
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1970020..1981117

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SCI_RS09865 (SCI_1922)	pgsA	1970490..1971029 (-)	540	WP_006270330.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
SCI_RS09870 (SCI_1923)	rodZ	1971040..1971861 (-)	822	WP_020998125.1	cytoskeleton protein RodZ	-
SCI_RS09875 (SCI_1924)	yfmH	1971920..1973215 (-)	1296	WP_006268797.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
SCI_RS09880 (SCI_1925)	yfmF	1973215..1974462 (-)	1248	WP_020998126.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
SCI_RS09885 (SCI_1926)	yaaA	1974637..1975017 (+)	381	WP_020998127.1	S4 domain-containing protein YaaA	-
SCI_RS09890 (SCI_1927)	recF	1975020..1976117 (+)	1098	WP_020998128.1	DNA replication/repair protein RecF	Machinery gene
SCI_RS09895 (SCI_1928)	guaB	1976202..1977683 (-)	1482	WP_003071643.1	IMP dehydrogenase	-
SCI_RS09900 (SCI_1929)	trpS	1977821..1978846 (-)	1026	WP_006268883.1	tryptophan--tRNA ligase	-
SCI_RS09905 (SCI_1930)	galE	1978928..1979923 (-)	996	WP_020998129.1	UDP-glucose 4-epimerase GalE	-
SCI_RS09910 (SCI_1931)	-	1979943..1980632 (-)	690	WP_006268827.1	triose-phosphate isomerase	-

Sequence

Protein

• Length: 365 a.a.
• Molecular weight: 42277.89 Da
• Isoelectric Point: 9.4521

>NTDB_id=50678 SCI_RS09890 WP_020998128.1 1975020..1976117(+) (recF) [Streptococcus constellatus subsp. pharyngis C1050]
MWLKNLQIQHFRNYELIEIDFHPGLNIFLGQNAQGKTNILEAIYFLALTRSHRTRSDKDLIYFSKDTLKVSGQLVKQTGK
ISLEIDLTPKGRITKVNHLKQSKLSDYIGNMNIVLFAPEDLQLIKGAPALRRKFVDIELGQIKPIYLSDLSHYHHVLKQR
NTYLKTAKTIDETFLTVLDDQLVEFGCRIMQHRIEFLKKLEYFGQQKHLELSNNLENLTIKYCSSIRLSDFNKLEEAFRI
ALKQSRSRDLFKKTTGIGPHRDDIAFYINDMNANFGSQGQHRSVVLSLKLAEIELMETVTKEKPILLLDDVMSELDNNRQ
LNLLESISQNIQTFITTTTLEHLQSMPSDIKIFSIHEGKLTKKNM

Nucleotide

• Length: 1098 bp

>NTDB_id=50678 SCI_RS09890 WP_020998128.1 1975020..1976117(+) (recF) [Streptococcus constellatus subsp. pharyngis C1050]
ATGTGGTTAAAAAACTTACAAATTCAACATTTTCGCAATTACGAGCTAATTGAAATAGACTTTCATCCTGGACTCAACAT
TTTTCTAGGTCAAAATGCTCAAGGAAAAACAAATATTTTAGAAGCTATCTATTTTCTTGCATTGACACGGAGTCATCGAA
CTCGTTCAGATAAAGATTTAATTTATTTTTCTAAAGACACCTTAAAAGTATCTGGACAACTTGTCAAGCAAACTGGAAAG
ATTTCTTTAGAGATTGACTTGACACCAAAAGGAAGAATTACAAAGGTTAATCATCTAAAACAAAGCAAATTATCAGATTA
CATTGGAAATATGAATATTGTTTTGTTTGCTCCAGAAGATTTACAATTGATTAAAGGAGCTCCAGCCCTTAGACGCAAAT
TTGTTGATATAGAGTTGGGGCAAATTAAACCAATTTATTTATCTGATTTATCACATTATCATCATGTTCTAAAACAGAGA
AATACTTATTTAAAGACAGCAAAAACAATAGATGAGACTTTTTTAACTGTCTTGGATGATCAGTTAGTAGAGTTTGGTTG
CCGCATTATGCAGCATCGAATAGAATTTCTCAAAAAATTAGAATACTTTGGTCAGCAAAAACATTTGGAACTCTCAAATA
ATTTAGAAAATTTAACTATTAAATACTGCTCTTCTATTCGACTTTCAGATTTCAATAAACTAGAAGAAGCTTTTCGAATT
GCATTAAAACAAAGTCGTAGCAGAGATTTATTTAAAAAAACTACTGGAATTGGTCCCCATCGAGATGATATTGCTTTTTA
TATCAATGATATGAATGCTAATTTTGGTAGTCAAGGACAACATCGAAGCGTAGTCTTATCTCTCAAACTGGCAGAAATTG
AGCTTATGGAAACTGTTACTAAAGAAAAACCAATTCTTCTACTTGACGATGTCATGAGTGAACTTGACAATAACCGTCAA
CTTAATCTACTTGAATCTATTTCCCAAAACATCCAAACATTTATCACCACAACAACTCTAGAACATTTACAAAGCATGCC
TTCTGATATTAAAATTTTCTCAATTCACGAAGGAAAATTAACAAAAAAAAACATGTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	70.083	98.904	0.693
recF	Bacillus subtilis subsp. subtilis str. 168	44.324	100	0.449