Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   KRR37_RS13660 Genome accession   NZ_CP077652
Coordinates   3083824..3085245 (+) Length   473 a.a.
NCBI ID   WP_112491152.1    Uniprot ID   -
Organism   Streptomyces sp. HNA39     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3078824..3090245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KRR37_RS13645 (KRR37_13565) - 3079650..3080600 (-) 951 WP_127465743.1 Ppx/GppA phosphatase family protein -
  KRR37_RS13650 (KRR37_13570) - 3080640..3081482 (+) 843 WP_127465744.1 hypothetical protein -
  KRR37_RS13655 (KRR37_13575) - 3081616..3083634 (-) 2019 WP_248870645.1 hypothetical protein -
  KRR37_RS13660 (KRR37_13580) radA/sms 3083824..3085245 (+) 1422 WP_112491152.1 DNA repair protein RadA Machinery gene
  KRR37_RS13665 (KRR37_13585) disA 3085327..3086451 (+) 1125 WP_028416141.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  KRR37_RS13670 (KRR37_13590) - 3086898..3087734 (-) 837 WP_206304474.1 hypothetical protein -
  KRR37_RS13675 (KRR37_13595) - 3087986..3088915 (+) 930 WP_217688500.1 A/G-specific adenine glycosylase -
  KRR37_RS13680 (KRR37_13600) - 3089107..3089874 (+) 768 WP_248870647.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 49907.03 Da        Isoelectric Point: 8.2598

>NTDB_id=506711 KRR37_RS13660 WP_112491152.1 3083824..3085245(+) (radA/sms) [Streptomyces sp. HNA39]
MAARTKSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGAPAVRTTAAGRVSTAALPIGQVDSRTATARSTGVGE
LDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDDHRTLYVTAEESASQVRLRADRIRAISDHLYLAAETDLSAV
LAHLDEVKPSLLVLDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMATLLVGHVTKDGAIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDVAVPGTCLTVTLEGKRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLTEPAADLAIALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAHRLGFTHALVPTDPGRVPSGMKVTEVADMGDALRVLPRRSRQEAPQPRQEDNARR

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=506711 KRR37_RS13660 WP_112491152.1 3083824..3085245(+) (radA/sms) [Streptomyces sp. HNA39]
ATGGCTGCCCGTACGAAATCCGCGAAGGACCGGCCGTCCTACCGCTGCACCGAATGTGGCTGGACCACCGCCAAATGGCT
CGGCCGTTGCCCCGAATGCCAGGCCTGGGGGACGGTCGAGGAGTTCGGCGGCGCCCCCGCCGTGCGCACGACCGCGGCCG
GGCGGGTCTCCACCGCCGCGCTGCCGATCGGCCAGGTCGACAGCCGTACGGCCACGGCGCGCTCGACCGGCGTCGGGGAG
CTGGACCGGGTGCTCGGCGGCGGGCTGGTGCCGGGGGCCGTCGTGCTGCTGGCCGGTGAGCCGGGCGTCGGCAAGTCGAC
GCTACTGCTGGACGTGGCTGCCAAGGCGGCGAGCGACGACCACCGCACGCTCTACGTGACCGCCGAGGAGTCCGCCAGCC
AGGTCCGGCTGCGGGCCGACCGGATCCGGGCGATCAGCGACCACCTCTACCTCGCGGCGGAGACCGATCTCTCGGCGGTG
CTCGCGCATCTGGACGAGGTCAAGCCCTCGCTGCTCGTCCTGGACTCGGTGCAGACGGTCGCCTCGCCCGAGATCGACGG
CGCGCCCGGCGGGATGGCCCAGGTCCGGGAAGTGGCCGGGGCGCTGATCCGGGCCTCCAAGGAGCGCGGGATGGCCACGC
TGCTCGTCGGCCACGTCACCAAGGACGGCGCGATCGCCGGGCCCCGGCTGCTGGAGCACCTGGTGGACGTGGTGCTCTCC
TTCGAGGGCGACCGGCACGCCCGGCTCCGCCTGGTGCGCGGCGTCAAGAACCGTTACGGGGCGACCGACGAGGTCGGCTG
CTTCGAGCTGCACGACGAGGGCATCACCGGCCTCGCCGACCCCTCGGGCCTCTTCCTGACCCGGCGCGACGTCGCCGTCC
CGGGCACCTGCCTCACGGTGACGCTGGAGGGCAAGCGGCCCCTGGTCGCGGAGGTCCAGGCGCTCACGGTCGACTCCCAG
ATCCCCTCGCCCCGGCGCACCACCTCCGGTCTGGAGACCTCCCGGGTCTCGATGATGCTCGCCGTGCTGGAGCAGCGCGG
CCGGATCAGCGCGCTCGGCAAGCGGGACATCTACAGCGCGACGGTCGGCGGGGTGAAGCTCACCGAGCCCGCCGCCGACC
TCGCGATCGCGCTGGCGCTGGCCAGCGCCGCCAGTGACACCCCGCTGCCGAAGAACCTGGTCGCGATCGGTGAGGTGGGG
CTCGCGGGCGAGGTCAGAAGGGTCACCGGGGTGCAGCGGCGGCTGGCCGAGGCCCACCGCCTCGGCTTCACCCACGCCCT
GGTGCCGACCGACCCGGGACGGGTTCCTTCGGGTATGAAGGTCACAGAAGTCGCCGACATGGGGGATGCTCTGCGGGTCC
TCCCGCGCCGGTCTCGTCAGGAGGCGCCGCAGCCTCGTCAGGAAGACAACGCGCGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(371-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

AAA domain (AAA_25)

(85-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.929

95.772

0.421
  radA Streptococcus pneumoniae Rx1

42.826

95.772

0.41
  radA Streptococcus pneumoniae D39

42.826

95.772

0.41
  radA Streptococcus pneumoniae R6

42.826

95.772

0.41
  radA Streptococcus pneumoniae TIGR4

42.826

95.772

0.41
  radA Streptococcus mitis SK321

44.289

90.698

0.402
  radA Streptococcus mitis NCTC 12261

44.056

90.698

0.4