Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   KTN07_RS21140 Genome accession   NZ_CP077649
Coordinates   4426129..4426785 (+) Length   218 a.a.
NCBI ID   WP_000611335.1    Uniprot ID   Q3Z2T8
Organism   Escherichia coli strain ST865     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 4421129..4431785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KTN07_RS21110 (KTN07_21110) dcyD 4422009..4422995 (+) 987 WP_040079242.1 D-cysteine desulfhydrase -
  KTN07_RS21115 (KTN07_21115) tcyL 4423010..4423678 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  KTN07_RS21120 (KTN07_21120) tcyN 4423675..4424427 (+) 753 WP_001272994.1 L-cystine ABC transporter ATP-binding protein TcyN -
  KTN07_RS21125 (KTN07_21125) sdiA 4424657..4425379 (+) 723 WP_001154271.1 transcriptional regulator SdiA -
  KTN07_RS21130 (KTN07_21130) yecF 4425446..4425670 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  KTN07_RS21135 (KTN07_21135) yecU 4425657..4425833 (-) 177 WP_000590347.1 protein YecU -
  KTN07_RS24250 - 4425916..4425987 (-) 72 Protein_4134 transcriptional regulator -
  KTN07_RS21140 (KTN07_21140) letA 4426129..4426785 (+) 657 WP_000611335.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  KTN07_RS21145 (KTN07_21145) uvrC 4426782..4428614 (+) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  KTN07_RS21150 (KTN07_21150) pgsA 4428671..4429219 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  KTN07_RS21170 (KTN07_21170) yecA 4429869..4430534 (+) 666 WP_217609331.1 YecA family protein -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23892.65 Da        Isoelectric Point: 6.9614

>NTDB_id=506683 KTN07_RS21140 WP_000611335.1 4426129..4426785(+) (letA) [Escherichia coli strain ST865]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=506683 KTN07_RS21140 WP_000611335.1 4426129..4426785(+) (letA) [Escherichia coli strain ST865]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3Z2T8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.208

94.954

0.486
  letA Legionella pneumophila strain ERS1305867

51.208

94.954

0.486