Detailed information NTG0506603

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: I2437_RS04420
• Genome accession: NZ_CP065061
• Coordinates: 902231..903460 (+)
• Length: 409 a.a.
• NCBI ID: WP_138119364.1
• Uniprot ID: -
• Organism: Streptococcus equi subsp. zooepidemicus strain SEZ33
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 897231..908460

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I2437_RS04395 (IEMOCGPF_00877)	-	897958..899241 (-)	1284	WP_206158030.1	hydroxymethylglutaryl-CoA reductase, degradative	-
I2437_RS04400 (IEMOCGPF_00878)	-	899228..900403 (-)	1176	WP_165627714.1	hydroxymethylglutaryl-CoA synthase	-
I2437_RS04405 (IEMOCGPF_00879)	-	900588..901427 (+)	840	WP_165626051.1	thymidylate synthase	-
I2437_RS04410 (IEMOCGPF_00880)	-	901508..902005 (+)	498	WP_165627715.1	dihydrofolate reductase	-
I2437_RS04415 (IEMOCGPF_00881)	-	902025..902195 (+)	171	WP_012515696.1	hypothetical protein	-
I2437_RS04420 (IEMOCGPF_00882)	clpX	902231..903460 (+)	1230	WP_138119364.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
I2437_RS04425 (IEMOCGPF_00883)	yihA	903470..904069 (+)	600	WP_012677890.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-
I2437_RS04430 (IEMOCGPF_00884)	-	904431..907433 (+)	3003	WP_206157999.1	leucine-rich repeat domain-containing protein	-

Sequence

Protein

• Length: 409 a.a.
• Molecular weight: 45186.66 Da
• Isoelectric Point: 4.5726

>NTDB_id=506603 I2437_RS04420 WP_138119364.1 902231..903460(+) (clpX) [Streptococcus equi subsp. zooepidemicus strain SEZ33]
MAGNRSNDIKVHCSFCGKSQDEVKKIIAGNNVFICNECVALSQEIIKEELAEEVLADLTEVPKPKELLEILNQYVIGQER
AKRALSVAVYNHYKRISFTESRDDDDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENI
LLKLIQAADYNVERAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTK
NILFIVGGAFDGIEEIVKQRLGEKIIGFGQNSRKIDDNASYMQEINAEDIQKFGLIPEFIGRLPVVAALEQLNTEDLIRI
LTEPRNALVKQYQALLSYDGVELEFEKGALEAIAGRAIERKTGARGLRSIIEETMLDIMFEVPSQEEVTKVRITKEAVEG
QSKPILEIA

Nucleotide

• Length: 1230 bp

>NTDB_id=506603 I2437_RS04420 WP_138119364.1 902231..903460(+) (clpX) [Streptococcus equi subsp. zooepidemicus strain SEZ33]
ATGGCAGGAAATCGTAGTAACGATATTAAGGTTCATTGCTCGTTTTGCGGCAAGAGCCAAGACGAAGTGAAAAAAATTAT
TGCAGGTAATAACGTCTTTATTTGTAACGAATGTGTTGCCTTATCACAAGAAATCATCAAGGAAGAATTGGCAGAAGAGG
TTCTCGCTGATCTGACTGAGGTACCAAAGCCAAAAGAGCTGCTTGAGATTTTAAATCAATACGTCATTGGGCAGGAGCGT
GCTAAGAGAGCCTTATCAGTTGCAGTTTACAACCACTACAAGAGGATTTCATTTACTGAGAGTCGTGACGATGATGATGT
GGATTTGCAAAAGTCAAACATTCTGATGATTGGACCAACAGGCTCAGGAAAAACCTTTTTGGCACAGACCCTAGCTAAGA
GTTTGAATGTTCCGTTTGCTATTGCTGATGCAACCTCTTTGACTGAAGCAGGCTATGTCGGAGAGGATGTGGAAAATATC
CTTCTGAAATTAATTCAAGCCGCTGATTACAATGTTGAACGTGCAGAGCGCGGCATTATTTATGTTGACGAAATTGATAA
AATCGCTAAAAAGGGTGAAAATGTCTCTATCACTCGTGACGTATCAGGAGAGGGTGTCCAGCAAGCTTTGCTAAAAATCA
TTGAAGGAACGGTTGCCAGTGTTCCACCACAGGGTGGTCGTAAGCACCCAAACCAAGAGATGATACAGATTGATACCAAA
AATATCTTGTTTATCGTCGGAGGCGCTTTTGATGGTATCGAAGAAATTGTCAAGCAGCGCTTGGGAGAAAAGATCATTGG
CTTTGGGCAAAATAGTCGAAAGATTGATGACAATGCTTCCTATATGCAGGAGATCAATGCTGAGGATATTCAAAAATTTG
GTCTGATTCCTGAATTTATTGGACGCTTGCCTGTTGTGGCAGCGCTTGAGCAGCTTAATACTGAGGATTTGATTCGTATT
TTAACAGAGCCTAGAAATGCCCTTGTGAAGCAATATCAAGCCTTGCTGTCATATGATGGCGTAGAGCTTGAGTTTGAAAA
GGGAGCTCTGGAAGCTATTGCAGGCAGAGCTATTGAGCGCAAGACTGGTGCGCGTGGTCTGAGGTCTATTATCGAAGAAA
CCATGCTGGATATCATGTTTGAGGTGCCAAGCCAAGAGGAAGTAACCAAGGTACGCATTACTAAGGAAGCTGTCGAAGGT
CAATCAAAGCCTATTTTAGAGATAGCCTAA

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (110-305)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (312-390)

• ClpX C4-type zinc finger (zf-C4_ClpX) (12-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	88.753	100	0.888
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	59.102	98.044	0.579