Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   I2437_RS01470 Genome accession   NZ_CP065061
Coordinates   283831..284757 (+) Length   308 a.a.
NCBI ID   WP_012677390.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ33     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 278831..289757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I2437_RS01460 (IEMOCGPF_00289) amiA3 280292..282268 (+) 1977 WP_115251311.1 peptide ABC transporter substrate-binding protein Regulator
  I2437_RS01465 (IEMOCGPF_00290) amiC 282332..283831 (+) 1500 WP_012680091.1 ABC transporter permease Regulator
  I2437_RS01470 (IEMOCGPF_00291) amiD 283831..284757 (+) 927 WP_012677390.1 oligopeptide ABC transporter permease OppC Regulator
  I2437_RS01475 (IEMOCGPF_00292) amiE 284766..285836 (+) 1071 WP_012516279.1 ABC transporter ATP-binding protein Regulator
  I2437_RS01480 (IEMOCGPF_00293) amiF 285829..286752 (+) 924 WP_012516278.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34560.47 Da        Isoelectric Point: 7.1547

>NTDB_id=506584 I2437_RS01470 WP_012677390.1 283831..284757(+) (amiD) [Streptococcus equi subsp. zooepidemicus strain SEZ33]
MAAIDKNKFTFVELDSYASEVIDAPAYSYWKSVFRQFFSRKSTILMLVILIAIILMSFIYPMFANYDFGDVSNINDFSKR
YIAPNAEYWFGTDQNGQSLFDGVWYGARNSILISVIATIINMIIGVIVGGIWGVSKAVDKVMIEVYNIISNLPQMLIIIV
LTYSIGAGFWNLIFAFCVTGWIGIAYSIRVQILRYRDLEYNLASQTLGTPTHKIVIKNLLPQLVSVIVSMVSLLLPSYIS
SEAFLSFFGLGLPITEPSLGRLISNYSNNLTTNAYLFWIPLTTLILVSLPLYIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=506584 I2437_RS01470 WP_012677390.1 283831..284757(+) (amiD) [Streptococcus equi subsp. zooepidemicus strain SEZ33]
ATGGCAGCAATTGACAAAAATAAATTCACCTTTGTTGAATTGGATAGCTATGCATCAGAAGTCATTGATGCCCCTGCTTA
CTCTTATTGGAAATCTGTCTTTAGGCAATTCTTCTCACGTAAATCAACTATTTTGATGCTGGTTATTTTAATTGCTATTA
TTTTGATGAGCTTCATCTACCCTATGTTTGCCAACTATGACTTTGGTGACGTGAGCAATATTAATGATTTTTCAAAGCGT
TATATCGCACCTAATGCAGAGTATTGGTTTGGTACGGATCAAAATGGTCAATCGCTCTTTGATGGTGTTTGGTATGGTGC
TAGAAATTCAATCTTAATTTCAGTTATTGCAACCATCATCAATATGATTATCGGAGTCATTGTCGGTGGTATTTGGGGTG
TTTCCAAAGCAGTTGATAAGGTAATGATTGAGGTGTATAATATCATCTCTAACCTGCCGCAAATGCTCATTATCATTGTG
TTGACTTATTCTATCGGAGCAGGCTTTTGGAACTTGATTTTTGCTTTTTGTGTGACAGGCTGGATTGGAATTGCTTATTC
GATTCGTGTACAAATTTTGCGTTATCGTGATTTAGAATACAATTTAGCAAGTCAGACCTTAGGAACACCCACCCATAAAA
TTGTCATTAAAAATCTTTTACCTCAATTGGTTTCGGTGATCGTTTCGATGGTTTCCTTGCTATTGCCGTCCTATATTTCA
TCAGAGGCCTTCTTATCCTTCTTTGGCTTGGGATTACCAATCACAGAACCAAGCTTGGGTCGATTGATTTCAAATTATTC
AAACAATTTAACAACAAATGCCTATTTATTCTGGATTCCATTGACAACTCTTATTCTTGTTTCCCTACCTTTATACATTG
TAGGACAAAACTTAGCAGATGCTAGTGATCCAAGGACGCATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-75)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

75.325

100

0.753
  amiD Streptococcus thermophilus LMG 18311

74.675

100

0.747
  amiD Streptococcus thermophilus LMD-9

74.675

100

0.747