Detailed information NTG0506547

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: I2436_RS05435
• Genome accession: NZ_CP065060
• Coordinates: 1148786..1150015 (-)
• Length: 409 a.a.
• NCBI ID: WP_206152631.1
• Uniprot ID: -
• Organism: Streptococcus equi subsp. zooepidemicus strain SEZ28
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 1143786..1155015

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I2436_RS05425 (GDAKBCAL_01084)	-	1144804..1147815 (-)	3012	WP_012515693.1	leucine-rich repeat domain-containing protein	-
I2436_RS05430 (GDAKBCAL_01085)	yihA	1148177..1148776 (-)	600	WP_012677890.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-
I2436_RS05435 (GDAKBCAL_01086)	clpX	1148786..1150015 (-)	1230	WP_206152631.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
I2436_RS05440 (GDAKBCAL_01087)	-	1150051..1150221 (-)	171	WP_012515696.1	hypothetical protein	-
I2436_RS05445 (GDAKBCAL_01088)	-	1150241..1150738 (-)	498	WP_126436753.1	dihydrofolate reductase	-
I2436_RS05450 (GDAKBCAL_01089)	-	1150819..1151658 (-)	840	WP_043025902.1	thymidylate synthase	-
I2436_RS05455 (GDAKBCAL_01090)	-	1151843..1153018 (+)	1176	WP_012515699.1	hydroxymethylglutaryl-CoA synthase	-
I2436_RS05460 (GDAKBCAL_01091)	-	1153005..1154288 (+)	1284	WP_043030859.1	hydroxymethylglutaryl-CoA reductase, degradative	-

Sequence

Protein

• Length: 409 a.a.
• Molecular weight: 45185.72 Da
• Isoelectric Point: 4.5726

>NTDB_id=506547 I2436_RS05435 WP_206152631.1 1148786..1150015(-) (clpX) [Streptococcus equi subsp. zooepidemicus strain SEZ28]
MAGNRSNDIKVHCSFCGKSQDEVKKIIAGNNVFICNECVALSQEIIKEELAEEVLADLTEVPKPKELLEILNQYVIGQER
AKRALSVAVYNHYKRISFTESRDDDDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENI
LLKLIQAADYNVERAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTK
NILFIVGGAFDGIEEIVKQRLGEKIIGFGQNSRKIDDNASYMQEIIAEDIQKFGLIPEFIGRLPVVAALEQLNTEDLIRI
LTEPRNALVKQYQALLSYDGVELEFEKGALEAIAGRAIERKTGARGLRSIIEETMLDIMFEVPSQEEVTKVRITKEAVEG
QSKPILEIA

Nucleotide

• Length: 1230 bp

>NTDB_id=506547 I2436_RS05435 WP_206152631.1 1148786..1150015(-) (clpX) [Streptococcus equi subsp. zooepidemicus strain SEZ28]
ATGGCAGGAAATCGTAGTAACGATATTAAGGTTCATTGCTCGTTTTGCGGCAAGAGCCAAGACGAAGTGAAAAAAATTAT
TGCAGGCAATAACGTCTTTATTTGTAACGAATGTGTTGCCTTATCACAAGAAATCATCAAGGAAGAATTGGCAGAAGAGG
TTCTCGCTGATCTGACTGAGGTACCAAAGCCAAAAGAGCTGCTTGAGATTTTAAATCAATACGTCATTGGGCAGGAGCGT
GCTAAGAGAGCCTTATCAGTTGCAGTTTACAACCACTACAAGAGGATTTCATTTACTGAGAGTCGTGACGATGATGATGT
GGATTTGCAGAAGTCCAATATTCTGATGATTGGACCAACAGGCTCAGGTAAGACCTTTTTAGCCCAGACTCTGGCTAAGA
GCCTTAATGTTCCATTTGCTATTGCTGATGCAACCTCTTTGACTGAGGCAGGCTATGTCGGAGAGGATGTGGAAAATATC
CTTCTGAAATTAATTCAAGCCGCTGATTACAATGTTGAACGTGCAGAGCGTGGCATTATTTATGTTGATGAAATTGATAA
AATCGCTAAAAAAGGTGAGAATGTCTCTATCACTCGTGATGTATCAGGAGAAGGTGTCCAACAAGCCTTGCTAAAAATTA
TTGAGGGAACGGTTGCTAGTGTTCCACCGCAAGGTGGTCGTAAGCACCCAAACCAAGAGATGATACAGATTGATACCAAA
AATATCTTGTTTATTGTCGGAGGCGCCTTTGATGGTATCGAAGAAATTGTCAAGCAGCGCTTGGGGGAAAAGATCATTGG
CTTTGGGCAAAATAGTCGAAAGATTGATGACAATGCCTCCTATATGCAGGAGATCATTGCTGAGGATATTCAAAAATTTG
GTCTGATTCCCGAATTTATTGGACGCTTGCCTGTTGTGGCAGCGCTTGAGCAGCTTAATACCGAGGATTTGATTCGTATT
TTAACAGAGCCTAGAAATGCTCTTGTGAAGCAATATCAAGCCTTGCTGTCATATGATGGCGTAGAGCTTGAGTTTGAAAA
GGGGGCTCTGGAAGCTATTGCAGGCAGGGCTATTGAGCGCAAGACTGGTGCGCGTGGTCTGAGGTCTATTATCGAAGAAA
CCATGCTGGATATCATGTTTGAGGTGCCAAGCCAAGAGGAAGTAACCAAGGTACGCATTACTAAGGAAGCTGTCGAGGGC
CAATCAAAGCCTATTTTAGAGATAGCCTAA

Domains

Predicted by InterproScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (312-390)

• AAA domain (Cdc48 subfamily) (AAA_2) (110-305)

• ClpX C4-type zinc finger (zf-C4_ClpX) (12-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	88.998	100	0.89
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	59.102	98.044	0.579