Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   KTN75_RS03375 Genome accession   NZ_CP077635
Coordinates   630012..630395 (+) Length   127 a.a.
NCBI ID   WP_002852281.1    Uniprot ID   Q9PHN2
Organism   Campylobacter jejuni strain R19.1007     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 625012..635395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KTN75_RS03355 (KTN75_03355) - 625091..627025 (-) 1935 WP_217295994.1 ribonuclease R family protein -
  KTN75_RS03360 (KTN75_03360) ilvC 627144..628166 (+) 1023 WP_002852218.1 ketol-acid reductoisomerase -
  KTN75_RS03365 (KTN75_03365) - 628170..629252 (+) 1083 WP_002859983.1 divergent polysaccharide deacetylase family protein -
  KTN75_RS03370 (KTN75_03370) dprA 629242..630015 (+) 774 WP_002859984.1 DNA-processing protein DprA Machinery gene
  KTN75_RS03375 (KTN75_03375) dprB 630012..630395 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX Machinery gene
  KTN75_RS03380 (KTN75_03380) - 630424..631263 (+) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  KTN75_RS03385 (KTN75_03385) msrA 631439..631936 (-) 498 WP_002852283.1 peptide-methionine (S)-S-oxide reductase MsrA -
  KTN75_RS03390 (KTN75_03390) ppa 631978..632496 (-) 519 WP_002867724.1 inorganic diphosphatase -
  KTN75_RS03395 (KTN75_03395) adk 632506..633084 (-) 579 WP_002859580.1 adenylate kinase -
  KTN75_RS03400 (KTN75_03400) aspS 633081..634832 (-) 1752 WP_032584680.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14088.59 Da        Isoelectric Point: 9.5433

>NTDB_id=506499 KTN75_RS03375 WP_002852281.1 630012..630395(+) (dprB) [Campylobacter jejuni strain R19.1007]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=506499 KTN75_RS03375 WP_002852281.1 630012..630395(+) (dprB) [Campylobacter jejuni strain R19.1007]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACATGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PHN2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449