Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   I2435_RS07025 Genome accession   NZ_CP065059
Coordinates   1431560..1433362 (-) Length   600 a.a.
NCBI ID   WP_206156340.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ25     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1426560..1438362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I2435_RS07000 (JFMEOBDD_01409) prsA 1427639..1428640 (-) 1002 WP_111692313.1 peptidylprolyl isomerase PrsA -
  I2435_RS07005 (JFMEOBDD_01410) - 1428703..1429410 (-) 708 WP_206156338.1 O-methyltransferase -
  I2435_RS07010 (JFMEOBDD_01411) - 1429493..1430131 (-) 639 WP_172954538.1 HAD family hydrolase -
  I2435_RS07015 (JFMEOBDD_01412) - 1430178..1430813 (-) 636 WP_206156339.1 HAD-IA family hydrolase -
  I2435_RS07020 (JFMEOBDD_01413) - 1430803..1431360 (-) 558 WP_012678253.1 GNAT family N-acetyltransferase -
  I2435_RS07025 (JFMEOBDD_01414) pepF 1431560..1433362 (-) 1803 WP_206156340.1 oligoendopeptidase F Regulator
  I2435_RS07030 (JFMEOBDD_01415) - 1433352..1434329 (-) 978 WP_043030612.1 competence protein CoiA family protein -
  I2435_RS07035 (JFMEOBDD_01416) - 1434421..1435137 (-) 717 WP_012515300.1 pseudouridine synthase -
  I2435_RS07040 (JFMEOBDD_01417) - 1435309..1436013 (-) 705 WP_043030611.1 glucosamine-6-phosphate deaminase -
  I2435_RS07045 (JFMEOBDD_01418) queA 1436281..1437309 (+) 1029 WP_012678257.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69074.80 Da        Isoelectric Point: 4.5408

>NTDB_id=506498 I2435_RS07025 WP_206156340.1 1431560..1433362(-) (pepF) [Streptococcus equi subsp. zooepidemicus strain SEZ25]
MTDNRSHLEEKYTWDLSTIFATDAAWETEADSLSAAIEAARQQAGHLLDSSSSLLDITELQLELARRVEKLYVYASMKND
QDTTVAKYQEYQAKASGIYAKFSEAFSFYEPEFMDLTQETYQAFLAEKPELAVYDHFFDKLFKAREHVLSQAEEELLAGA
QEIFNGAEETFSILDNADIAFPIVTNDKGEEVELTHGNFISLMESKDRTVRQAAYEAMYSTYEQFQHTYAKTLQTNVKVQ
NYKARVHKYASARQAAMSANFIPEAVYDTLLETVNKHLPLLHRYLKLRQEVLGLDDLKMYDVYTPLSETDLAIGYDEALE
KAEKVLAVFGQDYSERVHRAFTERWIDVHVNKGKRSGAYSGGSYDTNAFMLLNWQDTLDNLYTLVHETGHSLHSTFTRET
QPYVYGDYSIFLAEIASTTNENIMTEALLNEVEDDKERFAILNHYLDGFRGTVFRQTQFAEFEHAIHQADQNGEVLTSEY
LNKLYADLNEKYYGLKKEDNHFIQYEWARIPHFYYNYYVYQYATGFAAASYLADKIVHGTQEDIDHYLTYLKSGNSDYPL
EVIAKAGVDMAKGDYLEAAFKVFEERLTELEDLVARGVHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=506498 I2435_RS07025 WP_206156340.1 1431560..1433362(-) (pepF) [Streptococcus equi subsp. zooepidemicus strain SEZ25]
ATGACAGATAATCGTAGTCATCTAGAGGAAAAGTACACTTGGGATTTAAGCACTATTTTTGCAACTGACGCAGCTTGGGA
AACAGAGGCAGATAGCCTGTCAGCAGCTATTGAGGCTGCAAGACAGCAGGCTGGGCATTTGTTGGATTCAAGTAGCAGTC
TCTTAGACATCACAGAGCTACAGTTGGAGCTGGCTCGTCGTGTTGAAAAGCTTTATGTTTATGCCAGCATGAAAAACGAT
CAGGATACAACAGTTGCGAAGTATCAGGAATATCAGGCTAAGGCTTCTGGTATTTATGCTAAATTTAGCGAAGCCTTCTC
TTTTTATGAGCCAGAGTTTATGGACTTGACTCAAGAGACCTATCAGGCCTTCTTAGCGGAAAAGCCAGAATTAGCAGTCT
ATGACCATTTCTTTGACAAGTTGTTTAAGGCGCGTGAGCATGTCCTTAGTCAGGCTGAGGAGGAGCTATTAGCAGGGGCA
CAAGAAATCTTTAATGGTGCTGAGGAGACCTTTAGTATCTTAGATAATGCCGACATTGCTTTTCCTATTGTGACAAATGA
TAAGGGAGAAGAGGTTGAGCTAACACATGGTAATTTCATTAGCCTAATGGAATCTAAAGACCGTACAGTGCGTCAGGCGG
CCTATGAGGCGATGTATAGCACCTATGAGCAATTCCAGCATACCTATGCTAAAACCCTGCAAACCAATGTCAAGGTGCAA
AATTATAAGGCACGTGTCCATAAGTATGCTTCAGCCCGTCAGGCAGCGATGTCAGCCAACTTTATCCCAGAGGCTGTTTA
CGATACCCTACTAGAAACCGTTAATAAGCATTTACCGCTGCTTCATCGTTATTTGAAGCTACGTCAAGAGGTGCTTGGTT
TAGATGATCTAAAGATGTATGATGTTTATACTCCTTTATCTGAGACAGATCTTGCTATCGGCTATGATGAGGCCTTGGAA
AAAGCAGAGAAGGTTTTGGCTGTTTTTGGTCAGGATTATTCAGAGCGTGTGCATCGTGCCTTTACAGAGCGTTGGATTGA
TGTGCATGTCAATAAGGGCAAACGCTCAGGTGCCTATTCTGGTGGTTCCTATGATACAAATGCCTTTATGCTCTTAAATT
GGCAGGACACGCTTGATAACCTCTATACTTTGGTGCATGAGACAGGCCATAGCCTGCATTCAACCTTTACGCGTGAAACA
CAGCCTTACGTGTATGGAGATTACAGCATTTTCCTAGCTGAGATTGCCTCAACGACGAATGAAAACATCATGACTGAGGC
CTTGCTAAATGAGGTAGAGGACGACAAGGAGCGCTTTGCTATTTTGAACCATTACCTAGATGGTTTTCGTGGAACGGTTT
TCCGTCAGACACAGTTTGCTGAGTTTGAGCATGCTATTCATCAGGCGGATCAAAATGGTGAGGTGTTAACAAGTGAATAC
CTCAATAAGCTATATGCTGATTTAAATGAAAAGTATTATGGATTAAAGAAAGAGGACAACCACTTTATCCAGTATGAGTG
GGCTCGTATCCCACACTTCTATTACAACTACTATGTCTATCAATATGCAACAGGCTTTGCTGCAGCTAGCTACTTGGCTG
ATAAGATTGTGCATGGTACTCAAGAGGATATTGATCACTACTTGACTTATCTGAAGTCTGGAAATTCAGATTATCCTCTT
GAGGTGATTGCTAAGGCTGGGGTTGATATGGCTAAGGGTGATTACCTCGAAGCAGCCTTTAAGGTCTTTGAAGAGCGTTT
GACAGAGCTAGAGGACTTAGTGGCAAGAGGGGTACATCTCTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

73.167

100

0.732