Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA/cflA   Type   Machinery gene
Locus tag   I2434_RS07765 Genome accession   NZ_CP065058
Coordinates   1647588..1648910 (-) Length   440 a.a.
NCBI ID   WP_165623522.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ18     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1642588..1653910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I2434_RS07755 (MCPGFBBE_01559) raiA 1646324..1646872 (-) 549 WP_014623350.1 ribosome-associated translation inhibitor RaiA -
  I2434_RS07760 (MCPGFBBE_01560) - 1646948..1647529 (-) 582 WP_247874569.1 ComF family protein -
  I2434_RS07765 (MCPGFBBE_01561) comFA/cflA 1647588..1648910 (-) 1323 WP_165623522.1 DEAD/DEAH box helicase Machinery gene
  I2434_RS07770 (MCPGFBBE_01562) - 1648966..1649607 (+) 642 WP_165623523.1 YigZ family protein -
  I2434_RS07775 (MCPGFBBE_01563) cysK 1649728..1650654 (+) 927 WP_042671179.1 cysteine synthase A -
  I2434_RS07780 (MCPGFBBE_01564) - 1651062..1651427 (-) 366 WP_042671180.1 S1 RNA-binding domain-containing protein -
  I2434_RS07785 (MCPGFBBE_01565) - 1651427..1652827 (-) 1401 WP_165623524.1 Cof-type HAD-IIB family hydrolase -
  I2434_RS07790 (MCPGFBBE_01566) - 1652860..1653501 (-) 642 WP_041785672.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 440 a.a.        Molecular weight: 50046.25 Da        Isoelectric Point: 9.6948

>NTDB_id=506437 I2434_RS07765 WP_165623522.1 1647588..1648910(-) (comFA/cflA) [Streptococcus equi subsp. zooepidemicus strain SEZ18]
MENIENYYGRLLPERQCPKAVSVWACSLQSMIAKKGTLYCQRCSSLIEKAHQLPSGAYYCRACLVFGRNQSDRPLLYFPP
APFPKAHYLRWQGQLTTYQAAISHQLTNHVKLKQDTLVHAVTGAGKTEMMYEAIAAVVNKGGWVCIASPRVDVCIELEKR
LSRDFSCQICLMHAESEVYHRSPIIVATTHQLMTFYHAFDLLIIDEVDAFPFVNNRQLNHAAHQAAKADAVTVYLTATST
KDLERKVKQKELVKLTLARRFHGKPLVVPKYQRLFSLLEAINRGKLPRRFITLVKKQRATGYPLLIFFPLIELAEQCCQL
LQKYFPKETIAHASSQSSNRMTIIEQFRQGQITILISTTILERGVTFPTVDVFVLLANHRLYTSSSLIQISGRVGRSLER
PEGQVLFFHDGISQAMLKAVREIKDMNQKGYQNELSTLPQ

Nucleotide


Download         Length: 1323 bp        

>NTDB_id=506437 I2434_RS07765 WP_165623522.1 1647588..1648910(-) (comFA/cflA) [Streptococcus equi subsp. zooepidemicus strain SEZ18]
ATGGAGAATATCGAAAATTACTATGGACGTCTTTTACCCGAAAGGCAATGCCCAAAGGCTGTTTCTGTCTGGGCTTGCAG
CTTACAAAGCATGATCGCTAAAAAAGGAACATTATACTGCCAACGCTGTAGCAGCTTAATTGAGAAAGCTCATCAGCTAC
CTAGCGGTGCTTACTATTGTAGAGCCTGTCTCGTTTTTGGTCGAAACCAATCTGATCGGCCCTTGCTCTATTTTCCACCG
GCTCCTTTTCCAAAGGCACATTATCTGAGGTGGCAAGGACAGCTCACGACATATCAGGCAGCTATCTCTCATCAGCTTAC
TAACCATGTTAAGCTCAAGCAAGACACCTTAGTTCATGCGGTTACTGGTGCTGGCAAAACAGAGATGATGTATGAAGCTA
TTGCAGCAGTTGTTAATAAGGGTGGCTGGGTCTGCATTGCTAGTCCACGAGTTGATGTTTGCATAGAGCTTGAAAAACGA
CTATCGCGGGACTTTTCTTGTCAAATCTGCCTTATGCATGCTGAGTCAGAGGTTTATCATAGAAGCCCCATTATCGTTGC
CACAACACATCAATTGATGACCTTTTACCATGCTTTTGATCTGCTCATTATTGACGAAGTAGATGCCTTCCCCTTTGTCA
ATAATCGTCAATTAAACCATGCTGCTCATCAGGCTGCAAAAGCAGATGCAGTGACAGTATACCTAACAGCAACCTCTACA
AAAGACTTAGAGCGCAAGGTCAAGCAAAAAGAGCTTGTCAAATTGACATTGGCAAGAAGATTTCATGGCAAGCCCTTAGT
TGTTCCAAAGTATCAAAGATTATTCTCCCTTTTAGAGGCTATCAATCGCGGGAAATTGCCTAGAAGGTTCATCACCCTAG
TCAAAAAACAAAGGGCAACTGGCTATCCTCTCTTAATCTTTTTTCCGCTTATTGAGCTAGCTGAGCAATGCTGTCAGCTG
CTCCAAAAGTATTTTCCTAAGGAAACTATTGCCCATGCTTCCAGTCAGTCATCAAATCGAATGACTATCATTGAGCAATT
CAGACAAGGACAAATCACTATACTTATATCAACAACCATTTTGGAAAGAGGTGTGACCTTTCCGACCGTAGATGTCTTTG
TCTTATTAGCCAATCATCGCCTTTACACAAGCAGCAGTCTTATTCAGATTTCAGGTCGCGTTGGGCGCTCTTTGGAAAGA
CCGGAAGGACAGGTGCTATTTTTTCATGATGGTATTAGCCAGGCTATGCTCAAGGCAGTGCGGGAGATAAAGGACATGAA
TCAAAAAGGGTATCAAAATGAACTGTCTACTCTGCCACAATAA

Domains

Predicted by InterproScan.

DEAD/DEAH box helicase (DEAD)

(101-244)

Helicase conserved C-terminal domain (Helicase_C)

(288-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA/cflA Streptococcus mitis SK321

52.941

96.591

0.511
  comFA/cflA Streptococcus pneumoniae D39

52.941

96.591

0.511
  comFA/cflA Streptococcus pneumoniae R6

52.941

96.591

0.511
  comFA/cflA Streptococcus pneumoniae Rx1

52.941

96.591

0.511
  comFA/cflA Streptococcus pneumoniae TIGR4

52.941

96.591

0.511
  comFA/cflA Streptococcus mitis NCTC 12261

52.706

96.591

0.509
  comFA Lactococcus lactis subsp. cremoris KW2

48.724

89.091

0.434