Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   JGX27_RS10455 Genome accession   NZ_CP077423
Coordinates   2085219..2085917 (+) Length   232 a.a.
NCBI ID   WP_043878612.1    Uniprot ID   A0A1I7IST5
Organism   Streptococcus gallolyticus subsp. gallolyticus TX20005     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2080219..2090917
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGX27_RS10430 (JGX27_10430) - 2081085..2082266 (-) 1182 WP_009855063.1 ryptide export MFS transporter -
  JGX27_RS10435 (JGX27_10435) - 2082339..2082509 (-) 171 WP_231845019.1 potassium transporter Trk -
  JGX27_RS10440 (JGX27_10440) - 2082674..2083399 (-) 726 WP_172855748.1 ABC transporter permease -
  JGX27_RS10445 (JGX27_10445) - 2083399..2084142 (-) 744 WP_009855066.1 bacteriocin -
  JGX27_RS10450 (JGX27_10450) - 2084144..2085052 (-) 909 WP_043878611.1 ABC transporter ATP-binding protein -
  JGX27_RS10455 (JGX27_10455) scnR 2085219..2085917 (+) 699 WP_043878612.1 response regulator transcription factor Regulator
  JGX27_RS10460 (JGX27_10460) - 2085927..2087276 (+) 1350 WP_009855069.1 sensor histidine kinase KdpD -
  JGX27_RS10465 (JGX27_10465) - 2087323..2088489 (-) 1167 WP_009855070.1 MFS transporter -
  JGX27_RS10470 (JGX27_10470) gltX 2088975..2090432 (-) 1458 WP_043878613.1 glutamate--tRNA ligase -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 26281.40 Da        Isoelectric Point: 6.0226

>NTDB_id=506360 JGX27_RS10455 WP_043878612.1 2085219..2085917(+) (scnR) [Streptococcus gallolyticus subsp. gallolyticus TX20005]
MDFEASLLKKRILIVDDDYSLNTSIKEVLKNAGFQHISCAYSISNSVDLLSMNNIDLIILDVMLPDGEGYSLAKDVRKHS
DIPILFLTAKNNPEDEINGLKAGGDDYVTKPFLPQVLIYRIMTLLRRAYKCDTELIELDNCTIHLTNALVQKGNVELSLT
PTEIQILKKLYANKNYIVSTESICDSVWKGENFGYEKSLMVHIRNIREKIEDNPSKPQHIVTVKGLGYKFVL

Nucleotide


Download         Length: 699 bp        

>NTDB_id=506360 JGX27_RS10455 WP_043878612.1 2085219..2085917(+) (scnR) [Streptococcus gallolyticus subsp. gallolyticus TX20005]
ATGGACTTTGAAGCATCACTTCTAAAGAAGAGGATTTTAATTGTTGATGATGACTACTCGCTCAATACTTCTATTAAAGA
AGTGTTGAAAAATGCAGGTTTTCAACATATTAGCTGTGCTTACAGTATCAGCAACAGCGTTGATTTGCTGTCGATGAATA
ATATCGATTTAATCATTTTAGATGTCATGCTTCCTGACGGAGAAGGCTATTCATTAGCCAAAGACGTTAGAAAACACTCT
GATATTCCTATATTATTTTTAACGGCTAAAAACAATCCTGAGGATGAAATTAATGGTTTAAAAGCTGGCGGAGATGACTA
CGTTACTAAGCCATTTTTGCCCCAAGTACTCATTTATCGTATTATGACCTTGCTAAGACGTGCTTACAAATGCGATACCG
AACTGATTGAATTGGACAACTGTACAATACATTTAACGAATGCTCTTGTTCAGAAGGGAAATGTCGAACTTTCACTAACT
CCTACCGAGATTCAAATTCTCAAAAAATTATACGCCAATAAAAATTATATTGTCTCAACAGAATCCATTTGCGATAGTGT
TTGGAAAGGCGAAAATTTTGGATACGAAAAATCACTTATGGTGCATATTCGCAATATCCGTGAAAAAATCGAAGATAATC
CTTCTAAACCCCAGCATATTGTTACCGTTAAAGGTTTAGGCTATAAGTTTGTATTGTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(12-121)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1I7IST5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

43.243

95.69

0.414
  vicR Streptococcus mutans UA159

37.118

98.707

0.366