Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA/cflA   Type   Machinery gene
Locus tag   I2433_RS02540 Genome accession   NZ_CP065056
Coordinates   499342..500664 (+) Length   440 a.a.
NCBI ID   WP_111678371.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ14     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 494342..505664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I2433_RS02515 (JDBNIEOD_00494) - 494745..495386 (+) 642 WP_021321066.1 response regulator -
  I2433_RS02520 (JDBNIEOD_00495) - 495420..496820 (+) 1401 WP_206152406.1 Cof-type HAD-IIB family hydrolase -
  I2433_RS02525 (JDBNIEOD_00496) - 496820..497182 (+) 363 WP_012516140.1 S1 RNA-binding domain-containing protein -
  I2433_RS02530 (JDBNIEOD_00497) cysK 497598..498524 (-) 927 WP_111678375.1 cysteine synthase A -
  I2433_RS02535 (JDBNIEOD_00498) - 498645..499286 (-) 642 WP_206152407.1 YigZ family protein -
  I2433_RS02540 (JDBNIEOD_00499) comFA/cflA 499342..500664 (+) 1323 WP_111678371.1 DEAD/DEAH box helicase Machinery gene
  I2433_RS02545 (JDBNIEOD_00500) - 500639..501304 (+) 666 WP_160112833.1 ComF family protein -
  I2433_RS02550 (JDBNIEOD_00501) raiA 501380..501928 (+) 549 WP_012679953.1 ribosome-associated translation inhibitor RaiA -

Sequence

Protein


Download         Length: 440 a.a.        Molecular weight: 49937.11 Da        Isoelectric Point: 9.6000

>NTDB_id=506359 I2433_RS02540 WP_111678371.1 499342..500664(+) (comFA/cflA) [Streptococcus equi subsp. zooepidemicus strain SEZ14]
MENIENYYGRLLPEGQCPKAVSVWACSLQSMIAKKGTLYCQRCSSLIEKAHQLPSGAYYCRACLVFGRNQSDRPLLYFPP
APFPKGHYLRWQGQLTTYQVAVSHQLTNHVKLKQDTLVHAVTGAGKTEMMYEAIAAVVDKGGWVCIASPRVDVCIELEKR
LSRDFSCQICLMHAESEAYHRSPIIIATTHQLMTFYHAFDLLIIDEVDAFPFVNNRQLNHAAHQAAKADAVTVYLTATST
RDLERKVKQKELVKLTLARRFHGKPLVVPKYQRLFSLLEAIHRGKLPRRLITLVKKQRATGYPLLIFFPLIELAEQCCQL
LQKYFPKETIAYASSQSSNRMAIIEQFRQGQITILISTTILERGVTFPTVDVFVLLANHRLYTSSSLIQISGRVGRSLER
PEGQVLFFHDGISKAMLKAVREIKDMNQKGYQNELSTLSQ

Nucleotide


Download         Length: 1323 bp        

>NTDB_id=506359 I2433_RS02540 WP_111678371.1 499342..500664(+) (comFA/cflA) [Streptococcus equi subsp. zooepidemicus strain SEZ14]
ATGGAGAATATCGAAAATTACTATGGACGTCTTTTACCCGAAGGGCAATGCCCAAAGGCTGTTTCTGTCTGGGCTTGTAG
CTTACAAAGCATGATCGCTAAAAAAGGAACATTATACTGCCAACGCTGTAGCAGTTTAATTGAGAAAGCTCATCAGCTAC
CTAGCGGTGCTTACTACTGTAGAGCCTGTCTCGTTTTTGGTCGAAACCAATCTGATCGGCCCTTGCTCTATTTTCCACCG
GCTCCTTTTCCAAAGGGACATTATCTGAGGTGGCAAGGACAGCTCACAACATATCAGGTAGCTGTCTCTCATCAGCTTAC
TAACCATGTTAAGCTCAAGCAAGACACACTGGTTCATGCCGTTACCGGCGCTGGTAAAACAGAGATGATGTATGAAGCTA
TTGCAGCAGTTGTTGATAAGGGTGGCTGGGTCTGCATTGCTAGTCCACGAGTTGATGTCTGCATAGAGCTTGAAAAACGA
CTATCGCGGGACTTTTCCTGTCAAATCTGTCTTATGCATGCTGAGTCAGAGGCTTATCATAGAAGTCCCATAATCATTGC
CACAACACATCAATTGATGACCTTTTACCATGCTTTTGATCTGCTCATTATTGACGAAGTAGATGCCTTTCCTTTTGTCA
ACAATCGTCAATTAAACCATGCTGCTCATCAGGCTGCAAAAGCAGATGCAGTGACAGTATACCTAACAGCAACCTCTACA
AGAGACTTAGAGCGCAAGGTCAAGCAAAAAGAGCTTGTCAAATTGACATTAGCAAGAAGATTTCATGGCAAGCCCTTAGT
TGTCCCAAAGTATCAAAGATTATTCTCCCTTTTAGAGGCTATCCATCGCGGGAAATTGCCTAGAAGGTTAATCACCCTAG
TCAAAAAACAAAGGGCAACAGGCTATCCCCTCTTAATCTTTTTCCCACTTATTGAGCTGGCTGAGCAGTGCTGTCAGCTG
CTGCAAAAGTATTTTCCTAAGGAAACTATTGCTTATGCTTCCAGTCAGTCATCAAATCGAATGGCTATCATTGAGCAATT
TAGACAAGGACAAATCACTATACTCATATCAACAACCATTTTAGAAAGAGGTGTGACCTTTCCAACCGTAGATGTCTTTG
TCTTGTTAGCCAATCATCGCCTTTACACAAGCAGCAGTCTTATTCAGATTTCAGGTCGCGTCGGGCGTTCCTTGGAAAGG
CCTGAAGGACAGGTGCTGTTTTTTCATGATGGCATTAGCAAGGCCATGCTCAAGGCAGTGCGGGAGATAAAGGATATGAA
TCAAAAAGGGTATCAAAATGAACTGTCTACTCTGTCACAATAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(287-396)

DEAD/DEAH box helicase (DEAD)

(111-244)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA/cflA Streptococcus pneumoniae R6

52.941

96.591

0.511
  comFA/cflA Streptococcus pneumoniae Rx1

52.941

96.591

0.511
  comFA/cflA Streptococcus pneumoniae D39

52.941

96.591

0.511
  comFA/cflA Streptococcus pneumoniae TIGR4

52.941

96.591

0.511
  comFA/cflA Streptococcus mitis SK321

52.941

96.591

0.511
  comFA/cflA Streptococcus mitis NCTC 12261

52.706

96.591

0.509
  comFA Lactococcus lactis subsp. cremoris KW2

47.704

89.091

0.425