Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   I2433_RS01755 Genome accession   NZ_CP065056
Coordinates   350023..351093 (+) Length   356 a.a.
NCBI ID   WP_012516279.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ14     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 345023..356093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I2433_RS01740 (JDBNIEOD_00338) amiA3 345549..347525 (+) 1977 WP_138119770.1 peptide ABC transporter substrate-binding protein Regulator
  I2433_RS01745 (JDBNIEOD_00339) amiC 347589..349088 (+) 1500 WP_012680091.1 ABC transporter permease Regulator
  I2433_RS01750 (JDBNIEOD_00340) amiD 349088..350014 (+) 927 WP_021321128.1 oligopeptide ABC transporter permease OppC Regulator
  I2433_RS01755 (JDBNIEOD_00341) amiE 350023..351093 (+) 1071 WP_012516279.1 ABC transporter ATP-binding protein Regulator
  I2433_RS01760 (JDBNIEOD_00342) amiF 351086..352009 (+) 924 WP_012516278.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 39734.86 Da        Isoelectric Point: 6.1118

>NTDB_id=506352 I2433_RS01755 WP_012516279.1 350023..351093(+) (amiE) [Streptococcus equi subsp. zooepidemicus strain SEZ14]
MTEKQEIILSAKNIVVEFDVRDRVLTAIRDVSLDLYKGEVLAVVGESGSGKSVLTKTFTGMLEANGRVASGTITYAGQEL
TELKNHKDWEAIRGSKIATIFQDPMTSLDPIQTIGSQITEVIVKHQKKSRSEAKALAIDYMTRVGIPEPEKRFGEYPFQY
SGGMRQRIVIAIALACKPDILICDEPTTALDVTIQAQIIDLLKTLQKEYHFTIIFITHDLGVVASIADKVAVMYAGEIIE
YGKVEEIFYDPRHPYTWSLLSSLPQLADEKGVLFSIPGTPPSLYKPIVGDAFAPRSQYAMAIDFEETVPRFTISDTHWAK
TWLLHPDAPKVQKPAVIQDLHQKILKKMSRQEEGNV

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=506352 I2433_RS01755 WP_012516279.1 350023..351093(+) (amiE) [Streptococcus equi subsp. zooepidemicus strain SEZ14]
ATGACTGAAAAACAAGAAATTATATTAAGTGCTAAAAATATTGTTGTAGAGTTTGATGTGCGTGATCGTGTACTGACCGC
TATTCGTGATGTTTCTCTTGATTTGTATAAGGGAGAGGTATTGGCTGTTGTTGGTGAGTCAGGCTCTGGCAAGTCTGTTT
TAACTAAGACATTTACAGGAATGCTGGAGGCAAATGGACGTGTTGCTTCAGGGACGATAACCTATGCAGGTCAAGAACTA
ACAGAGCTTAAAAATCATAAGGACTGGGAAGCTATTCGCGGCTCTAAAATTGCCACTATCTTTCAGGACCCAATGACTAG
TCTAGATCCGATTCAAACGATTGGCAGCCAGATTACTGAGGTTATTGTTAAGCATCAGAAAAAATCTAGATCAGAGGCTA
AGGCTTTAGCAATCGACTATATGACAAGGGTCGGTATTCCTGAGCCAGAAAAGCGTTTTGGAGAGTATCCTTTCCAATAT
TCTGGCGGTATGAGACAGCGTATTGTTATTGCCATTGCCCTAGCTTGTAAGCCAGATATTCTGATCTGTGATGAGCCGAC
AACAGCTCTTGACGTTACCATCCAGGCTCAGATTATTGATCTATTAAAGACGCTTCAAAAAGAGTATCACTTCACCATTA
TCTTTATCACGCATGACCTAGGAGTGGTTGCAAGTATTGCTGATAAGGTTGCTGTTATGTACGCAGGGGAGATTATTGAA
TACGGAAAGGTTGAGGAAATCTTCTATGATCCTCGTCACCCCTACACATGGAGCTTATTATCTAGCCTACCGCAATTGGC
AGATGAAAAGGGCGTTCTGTTTTCAATTCCAGGGACACCTCCGTCCCTATACAAGCCGATTGTTGGTGATGCCTTTGCGC
CACGCTCTCAGTATGCTATGGCCATTGATTTTGAAGAAACAGTTCCTCGTTTTACGATCAGTGACACGCACTGGGCAAAA
ACCTGGCTCCTACACCCAGATGCTCCTAAGGTTCAAAAGCCAGCTGTTATTCAGGATTTACACCAAAAAATATTGAAAAA
AATGTCACGTCAGGAGGAAGGAAATGTCTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(29-187)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

80

100

0.809
  amiE Streptococcus thermophilus LMG 18311

78.889

100

0.798
  amiE Streptococcus thermophilus LMD-9

78.889

100

0.798
  oppD Streptococcus mutans UA159

56.456

93.539

0.528