Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   JGX27_RS09810 Genome accession   NZ_CP077423
Coordinates   1951962..1954442 (+) Length   826 a.a.
NCBI ID   WP_009854941.1    Uniprot ID   -
Organism   Streptococcus gallolyticus subsp. gallolyticus TX20005     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1946962..1959442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGX27_RS09790 (JGX27_09790) - 1949351..1949899 (-) 549 WP_009854937.1 CvpA family protein -
  JGX27_RS09795 (JGX27_09795) zapA 1949902..1950210 (-) 309 WP_009854938.1 cell division protein ZapA -
  JGX27_RS09800 (JGX27_09800) rnhC 1950332..1951234 (+) 903 WP_009854939.1 ribonuclease HIII -
  JGX27_RS09805 (JGX27_09805) lepB 1951251..1951844 (+) 594 WP_009854940.1 signal peptidase I -
  JGX27_RS09810 (JGX27_09810) recD/recD2/recDB 1951962..1954442 (+) 2481 WP_009854941.1 ATP-dependent RecD-like DNA helicase Machinery gene
  JGX27_RS09815 (JGX27_09815) - 1954677..1955180 (+) 504 WP_009854942.1 hypothetical protein -
  JGX27_RS09820 (JGX27_09820) dinB 1955235..1956332 (-) 1098 WP_012962484.1 DNA polymerase IV -
  JGX27_RS09825 (JGX27_09825) pflB 1956558..1958882 (+) 2325 WP_009854944.1 formate C-acetyltransferase -
  JGX27_RS09830 (JGX27_09830) - 1958942..1959379 (+) 438 WP_009854945.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 826 a.a.        Molecular weight: 92848.91 Da        Isoelectric Point: 4.4401

>NTDB_id=506352 JGX27_RS09810 WP_009854941.1 1951962..1954442(+) (recD/recD2/recDB) [Streptococcus gallolyticus subsp. gallolyticus TX20005]
MEYFFSGTIDRIIFENASNFFKILLLEIEDTDSDFDDFEIIVTGTIADIIEGENYTFWGELTQHPKYGEQLRVTRYERSK
PTSSGLIKYFSSDHFKGIGKKTAEKIVQLYGDNTIDKILEDPSKLDSISGLSKENKDNFLTKLKLNYGTELILSKLAEYG
LTNRVAFEIFNQYKEDSLDIIQENPYQLVEDIQGIGFKIADQLAEQLGIEADAPQRFRAALVHSLFETSIERGDTYVEAR
DLLENAITTLEEARQIELDPAAVAKELSTLIAEDKVQNVGTKIFDNTLFYAESGIKKHLTRILDTPLDQNFSDGDLQEEI
ADVEEAFGISYDDVQKNAIKEALKSKVFILTGGPGTGKTTVINGLIAAYADLHHIDLEKKDIPIILAAPTGRAARRMNEL
TGLPSATIHRHLGLNGDNDYQAIDDYLDCDLIIIDEFSMVDTWLANQLFSSISSNTQVIIVGDSDQLPSVGPGQVLADLL
KIEALPQLALTKIFRQSEDSTIVTLANQMRLGKLPADFTQKKADRSYFEASAQYIPEMIPKIVSAAVKSGIDPQEIQILA
PMYRGAAGINRLNTIIQDLLNPLKDQLSFAFGEMNFRKGDKVLHLINDAELNIFNGDIGYITDLIPAKYTESKQDELYMS
FDGTEVIYPRNEWHKITLAYAMSIHKSQGSEFQVVILPITRQSHRLLQRNLIYTAITRSKSKLVMLGEIAAFDYAIKNEG
AKRNTYLVQRFTSSAQEEESIDLQTEISQQTSPKTDNEAEKITSPTSPQTNISKEENIQLTLDIAENEQTQTEQEPKIYR
LTEENLAFINPMIGITQADIEQFFKK

Nucleotide


Download         Length: 2481 bp        

>NTDB_id=506352 JGX27_RS09810 WP_009854941.1 1951962..1954442(+) (recD/recD2/recDB) [Streptococcus gallolyticus subsp. gallolyticus TX20005]
ATGGAATACTTCTTTTCTGGCACAATTGACCGTATTATTTTTGAAAATGCCAGTAATTTCTTTAAAATTTTATTACTCGA
AATTGAGGATACTGATTCAGACTTTGATGATTTTGAAATCATTGTTACTGGAACAATTGCTGATATTATCGAGGGAGAAA
ATTATACGTTTTGGGGTGAATTAACGCAACACCCAAAATATGGCGAACAGCTCAGAGTCACACGTTACGAGCGCAGCAAA
CCAACTTCTTCCGGTCTTATTAAATATTTTTCAAGCGACCATTTCAAAGGAATTGGTAAAAAAACTGCTGAAAAAATTGT
GCAGCTTTACGGCGACAATACCATTGATAAAATCCTAGAAGACCCTAGTAAATTAGACAGTATTTCTGGGCTCTCTAAGG
AAAATAAAGACAACTTTTTAACCAAACTCAAGCTTAATTATGGTACAGAGCTCATTTTATCCAAGTTAGCAGAGTATGGC
TTGACTAACCGCGTTGCCTTTGAAATTTTTAATCAATACAAGGAAGACAGTCTTGATATTATCCAAGAAAATCCTTATCA
ATTGGTCGAAGACATTCAAGGGATTGGTTTTAAAATCGCTGACCAACTCGCTGAACAATTGGGAATCGAAGCGGACGCTC
CTCAACGTTTTCGTGCTGCTCTCGTGCACAGTCTTTTTGAAACTTCTATTGAACGAGGAGATACTTACGTCGAAGCGCGT
GATTTGCTTGAAAATGCCATTACCACCCTTGAAGAAGCTAGACAAATTGAGTTAGACCCCGCAGCCGTTGCCAAAGAATT
ATCAACGCTTATCGCTGAAGATAAGGTGCAAAATGTCGGTACCAAAATTTTTGACAATACTCTTTTCTATGCTGAATCAG
GTATCAAAAAACACCTGACACGTATCCTTGATACGCCACTCGACCAAAACTTTTCAGATGGTGACTTGCAAGAAGAAATT
GCTGACGTTGAGGAAGCTTTCGGCATTTCTTACGATGATGTGCAAAAAAATGCTATCAAAGAAGCGCTCAAGAGCAAGGT
GTTTATTTTGACTGGTGGTCCTGGGACGGGAAAAACGACTGTTATCAACGGTTTGATTGCTGCCTACGCAGACCTTCATC
ACATTGACCTTGAGAAGAAAGATATTCCTATCATCTTAGCAGCGCCAACAGGACGTGCTGCCCGCCGTATGAATGAATTA
ACAGGCTTGCCAAGTGCGACTATTCACCGCCATTTGGGGTTAAATGGTGATAACGACTACCAAGCTATTGATGACTATCT
CGACTGTGACTTGATTATCATTGATGAATTTTCAATGGTTGATACTTGGCTTGCCAATCAACTCTTTAGTTCCATTTCGT
CCAATACTCAAGTCATCATCGTTGGAGATAGTGACCAATTGCCGTCTGTCGGTCCTGGGCAAGTATTAGCTGATTTATTA
AAAATTGAAGCTCTTCCTCAACTAGCATTGACTAAAATCTTTAGACAATCGGAAGATTCAACCATTGTTACACTTGCTAA
TCAGATGAGACTTGGAAAATTACCAGCTGACTTCACACAAAAGAAAGCTGACCGTTCTTATTTTGAAGCAAGTGCACAAT
ATATCCCAGAAATGATTCCTAAAATTGTCAGCGCAGCTGTTAAGAGTGGCATTGACCCACAAGAAATACAAATCCTTGCC
CCAATGTACCGTGGCGCAGCTGGGATTAATCGACTTAATACCATTATTCAGGATTTACTTAACCCACTTAAAGATCAACT
CTCGTTTGCCTTTGGTGAGATGAATTTCCGTAAGGGTGACAAAGTTCTCCACCTCATCAACGATGCTGAACTCAATATTT
TCAATGGTGATATCGGCTATATTACAGACCTTATTCCTGCTAAATATACCGAATCCAAACAAGACGAACTTTACATGTCT
TTTGACGGCACCGAAGTTATCTACCCTCGTAATGAATGGCATAAAATCACCCTTGCTTACGCCATGTCAATCCACAAATC
ACAAGGTAGCGAATTTCAGGTTGTCATTTTGCCGATCACTCGCCAAAGTCACCGACTCTTACAACGTAACCTCATTTACA
CAGCTATCACCCGCTCTAAGAGTAAATTAGTGATGTTAGGGGAAATTGCCGCCTTTGATTACGCCATAAAAAACGAAGGC
GCTAAGCGCAACACCTATCTTGTTCAACGCTTTACAAGCTCCGCACAAGAAGAAGAAAGTATTGATTTACAAACTGAAAT
TTCTCAACAAACATCACCTAAAACAGATAATGAAGCTGAGAAAATCACCTCTCCAACTTCTCCCCAAACAAATATTTCTA
AAGAAGAAAACATTCAACTGACACTAGATATTGCCGAAAATGAGCAAACACAAACAGAGCAAGAACCAAAAATCTATCGC
TTGACAGAAGAAAACTTGGCATTTATCAACCCAATGATTGGCATTACCCAAGCCGACATTGAACAATTTTTTAAGAAATA
A

Domains

Predicted by InterProScan.

AAA domain (AAA_30)

(331-522)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(659-705)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(572-638)

Helix-hairpin-helix containing domain (HHH_RecD2)

(147-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

41.956

94.068

0.395