Detailed information NTG0506270

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: IV454_RS22615
• Genome accession: NZ_CP065053
• Coordinates: 5083649..5086006 (+)
• Length: 785 a.a.
• NCBI ID: WP_206087944.1
• Uniprot ID: -
• Organism: Massilia antarctica strain P8398
• Function: DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5078649..5091006

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IV454_RS22590 (IV454_22570)	-	5078870..5080135 (+)	1266	WP_206087939.1	lipoprotein-releasing ABC transporter permease subunit	-
IV454_RS22595 (IV454_22575)	lolD	5080128..5080835 (+)	708	WP_206087940.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
IV454_RS22600 (IV454_22580)	-	5080838..5081632 (+)	795	WP_206087941.1	TatD family hydrolase	-
IV454_RS22605 (IV454_22585)	-	5081650..5082405 (-)	756	WP_206087942.1	SDR family NAD(P)-dependent oxidoreductase	-
IV454_RS22610 (IV454_22590)	-	5082539..5083426 (+)	888	WP_206087943.1	AraC family transcriptional regulator	-
IV454_RS22615 (IV454_22595)	comA	5083649..5086006 (+)	2358	WP_206087944.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
IV454_RS22620 (IV454_22600)	-	5086055..5086567 (+)	513	WP_206087945.1	hypothetical protein	-
IV454_RS22625 (IV454_22605)	-	5086545..5087975 (-)	1431	WP_206087946.1	ATP-binding protein	-
IV454_RS22630 (IV454_22610)	-	5087979..5088665 (-)	687	WP_206087947.1	response regulator transcription factor	-
IV454_RS22635 (IV454_22615)	-	5088804..5089274 (+)	471	WP_206087948.1	Spy/CpxP family protein refolding chaperone	-
IV454_RS22640 (IV454_22620)	-	5089292..5089885 (+)	594	WP_206087949.1	hypothetical protein	-
IV454_RS22645 (IV454_22625)	-	5089908..5090762 (+)	855	WP_206087950.1	intradiol ring-cleavage dioxygenase	-

Sequence

Protein

• Length: 785 a.a.
• Molecular weight: 84551.69 Da
• Isoelectric Point: 9.5275

>NTDB_id=506270 IV454_RS22615 WP_206087944.1 5083649..5086006(+) (comA) [Massilia antarctica strain P8398]
MRAAILGFACGAGLLQIQPVLPSPSTMAACAAIAVLLCCLRGVARLAMAGALAGFCWAALAAHLALAPALAKAVEGRDIT
VVGIVDSLPFRFDDGVRFNFKVERVLGEPVVVPPRVSLAWYAGYRDAAQAIGDVQPGERWQLVVRLQRPHGNMNPYGFDY
EAWLLEQGVRATGYVRPEGGTTRRLDGFVFSLSNLVEHCRATLRERILRALPGKEYAGVIVALVVGDQRAIGQADWDVFN
RTGIGHLISISGLHITMVAGLFASLASLLWRRSFFTDAQLPLLMPAPKVAALTGAAVALLYVLLAGFGVPAQRTLYMLTV
VAAALWFGRLTQVSHVLCVALGVVVVLDPWAIASPGFWLSFGAVAAILFATTGRTVVRQPRWRGVLLVAAHTQYVVTLAL
VPLTMLLFSQVSIVSPLANAVAIPVVSFVVTPLALAGSMLPAPLSTLLLNAAHYAVQGLAWALAWCSGLRFAVWSAPAPE
PWLFVFAVVGTLWMLAPRGWPHRWTGLAAWLPLLTAQPVSPPQGEVFVTAFDVGQGMALLIETGTHRLLYDTGPAYTRES
NGANRVILPYLKARGIGFLDGVVVSHSDIDHAGGARTLLGALKVGWVSSSLWFDHPIVKAAPRHARCSGGQQWTWDGVRF
EMLHPSVESYADASLKPNARGCVLRITAGVHSILLAADIEAAQEAKLVAGSAQLLRAEVLLAPHHGSGTSSTPVFLAAVQ
PRLVLFQVGYRNRYHHPKTEVVERYEKLGIERLRSDESGAIMLDSASGFAPVEYRREHARYWYGK

Nucleotide

• Length: 2358 bp

>NTDB_id=506270 IV454_RS22615 WP_206087944.1 5083649..5086006(+) (comA) [Massilia antarctica strain P8398]
ATGCGCGCCGCCATCCTGGGATTTGCCTGTGGCGCCGGCCTGCTGCAAATCCAGCCGGTGCTGCCATCACCATCGACCAT
GGCCGCATGCGCCGCCATCGCGGTCCTGCTTTGCTGTTTGCGCGGTGTTGCGAGGCTGGCCATGGCCGGTGCGCTCGCCG
GTTTCTGCTGGGCCGCGCTGGCCGCCCATCTGGCCTTGGCGCCGGCGCTGGCCAAAGCCGTCGAGGGCCGCGACATCACG
GTCGTCGGCATCGTCGACAGCCTGCCGTTCCGCTTCGATGACGGCGTGCGCTTCAATTTCAAGGTCGAAAGAGTGCTGGG
CGAGCCGGTGGTGGTGCCGCCGCGGGTGTCGCTGGCGTGGTATGCCGGCTACCGCGACGCCGCGCAAGCGATCGGCGACG
TGCAGCCCGGCGAACGCTGGCAGCTGGTCGTGCGCCTGCAACGCCCGCATGGAAACATGAACCCGTACGGCTTCGATTAC
GAGGCCTGGCTGCTGGAGCAGGGCGTGCGCGCCACCGGCTACGTGCGGCCGGAAGGCGGCACGACCCGGCGCCTGGACGG
TTTCGTCTTCAGCTTGTCGAACCTGGTCGAACATTGCCGGGCCACCTTGCGCGAGCGTATCCTGCGCGCGCTGCCGGGCA
AGGAATACGCCGGCGTGATCGTCGCCCTGGTCGTCGGCGACCAGCGCGCCATCGGGCAGGCCGACTGGGACGTGTTCAAC
CGCACCGGAATCGGCCACCTCATTTCCATCTCCGGCCTGCATATCACCATGGTGGCCGGACTGTTCGCGTCGCTCGCCTC
CTTGCTGTGGCGGCGCTCGTTTTTCACCGATGCGCAACTGCCTTTGCTGATGCCGGCGCCGAAGGTGGCCGCCTTGACGG
GCGCCGCGGTCGCGCTGTTGTACGTGCTGCTGGCCGGCTTCGGCGTGCCGGCGCAGCGCACTCTGTATATGTTGACCGTG
GTCGCCGCCGCGCTCTGGTTCGGCCGGCTCACGCAGGTGTCGCACGTGCTGTGCGTGGCGCTCGGCGTGGTCGTCGTGCT
CGATCCGTGGGCGATCGCTTCGCCCGGTTTCTGGCTGTCGTTCGGGGCCGTGGCGGCGATCCTGTTCGCGACCACCGGCC
GCACCGTTGTCAGGCAGCCGCGCTGGCGCGGCGTGCTGCTGGTGGCCGCGCATACGCAGTATGTGGTCACGCTCGCGCTG
GTTCCCCTGACGATGCTGCTGTTCTCGCAGGTGTCCATCGTCAGTCCGCTGGCCAACGCGGTGGCGATCCCGGTGGTCAG
CTTCGTCGTCACGCCGCTCGCGCTGGCCGGCAGCATGCTGCCGGCACCCTTGTCCACCTTGCTGCTCAATGCCGCGCACT
ATGCCGTGCAGGGACTGGCCTGGGCGCTCGCATGGTGCTCGGGATTGCGTTTTGCGGTGTGGAGCGCACCGGCTCCCGAG
CCGTGGCTGTTCGTGTTCGCGGTCGTCGGCACCTTGTGGATGCTCGCCCCGCGCGGCTGGCCGCACCGCTGGACCGGGCT
GGCCGCGTGGCTGCCGCTGCTCACCGCCCAGCCTGTGTCTCCGCCGCAGGGCGAGGTGTTCGTGACCGCATTCGATGTCG
GGCAGGGCATGGCGCTGTTGATCGAAACCGGCACGCACCGGCTGCTGTACGACACCGGACCGGCCTACACCCGCGAGTCG
AACGGTGCCAACCGGGTGATCCTGCCGTACCTCAAGGCGCGCGGCATCGGCTTTCTCGACGGCGTGGTCGTCAGCCACAG
CGACATTGACCATGCCGGCGGCGCGCGCACCTTGCTCGGCGCGCTCAAGGTCGGCTGGGTGTCGTCGTCGCTGTGGTTCG
ACCATCCGATCGTCAAGGCCGCGCCACGCCATGCCCGCTGCAGCGGCGGGCAGCAGTGGACCTGGGATGGCGTGCGCTTC
GAGATGCTGCATCCGAGCGTGGAAAGCTATGCGGATGCCAGCCTCAAACCGAACGCGCGCGGCTGCGTGCTGCGGATCAC
GGCGGGCGTCCATTCCATCCTGCTGGCGGCCGATATCGAGGCCGCGCAGGAGGCGAAGCTGGTCGCCGGATCGGCGCAGC
TGCTGCGCGCCGAGGTTTTGCTGGCGCCGCATCATGGCAGCGGTACCTCGTCGACACCGGTCTTCCTGGCCGCTGTGCAG
CCACGCCTGGTGCTGTTCCAAGTCGGTTATCGCAACCGCTACCATCACCCCAAGACGGAGGTGGTGGAGCGCTACGAAAA
ACTAGGCATCGAACGCTTGCGCTCGGACGAATCGGGAGCGATCATGCTCGATTCGGCCAGCGGCTTCGCGCCGGTCGAAT
ACCGGCGAGAACATGCGCGTTACTGGTACGGAAAGTAG

Domains

Predicted by InterproScan.

• Competence protein (Competence) (223-499)

• Domain of unknown function (DUF4131) (DUF4131) (22-177)

• Metallo-beta-lactamase superfamily (Lactamase_B) (533-681)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Ralstonia pseudosolanacearum GMI1000	45.258	100	0.48
comA	Pseudomonas stutzeri DSM 10701	38.021	97.834	0.372