Detailed information NTG0506249

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: IVB58_RS18750
• Genome accession: NZ_CP065051
• Coordinates: 331345..332205 (-)
• Length: 286 a.a.
• NCBI ID: WP_001152270.1
• Uniprot ID: -
• Organism: Acinetobacter baumannii strain 2016GDAB1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 326345..337205

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IVB58_RS01540 (IVB58_01530)	-	327236..328546 (+)	1311	WP_000753290.1	tetratricopeptide repeat protein	-
IVB58_RS01545 (IVB58_01535)	-	328623..328949 (+)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
IVB58_RS01550 (IVB58_01540)	rlmB	329051..329800 (+)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
IVB58_RS01555 (IVB58_01545)	-	329836..330750 (+)	915	WP_000075014.1	DMT family transporter	-
IVB58_RS01560 (IVB58_01550)	coaE	330747..331343 (-)	597	WP_000874125.1	dephospho-CoA kinase	-
IVB58_RS18750 (IVB58_01555)	pilD	331345..332205 (-)	861	WP_001152270.1	prepilin peptidase	Machinery gene
IVB58_RS01575 (IVB58_01560)	pilC	332205..333431 (-)	1227	WP_000279215.1	type II secretion system F family protein	Machinery gene
IVB58_RS01580 (IVB58_01565)	pilB	333461..335173 (-)	1713	WP_001274991.1	type IV-A pilus assembly ATPase PilB	Machinery gene
IVB58_RS01585 (IVB58_01570)	tpiA	335464..336258 (+)	795	WP_000016939.1	triose-phosphate isomerase	-
IVB58_RS01590 (IVB58_01575)	secG	336271..336600 (+)	330	WP_000555570.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32134.61 Da
• Isoelectric Point: 7.1041

>NTDB_id=506249 IVB58_RS18750 WP_001152270.1 331345..332205(-) (pilD) [Acinetobacter baumannii strain 2016GDAB1]
MQDIIAYFIQNLTALYIAVALMSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAIELLTMLCSLIVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=506249 IVB58_RS18750 WP_001152270.1 331345..332205(-) (pilD) [Acinetobacter baumannii strain 2016GDAB1]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCATGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCGATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTATGTTAAGAGGAAAGTGTGGCCATTGCCAGCACCCGATTAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAATAGTAGTCATGGTATTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTTCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	98.252	100	0.983
pilD	Acinetobacter nosocomialis M2	97.902	100	0.979
pilD	Vibrio cholerae strain A1552	53.676	95.105	0.51
pilD	Vibrio campbellii strain DS40M4	52.768	94.755	0.5
pilD	Neisseria gonorrhoeae MS11	47.727	92.308	0.441