Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   IVB58_RS16175 Genome accession   NZ_CP065051
Coordinates   3418828..3419463 (+) Length   211 a.a.
NCBI ID   WP_000472265.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 2016GDAB1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3413828..3424463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IVB58_RS16160 (IVB58_16110) adeT2 3414888..3415874 (-) 987 WP_000712902.1 putative multidrug efflux protein AdeT2 -
  IVB58_RS16165 (IVB58_16115) - 3415954..3416769 (-) 816 WP_000547772.1 NAD(P)H-binding protein -
  IVB58_RS16170 (IVB58_16120) recG 3416790..3418835 (+) 2046 WP_000204955.1 ATP-dependent DNA helicase RecG -
  IVB58_RS16175 (IVB58_16125) comF 3418828..3419463 (+) 636 WP_000472265.1 phosphoribosyltransferase family protein Machinery gene
  IVB58_RS16180 (IVB58_16130) - 3419466..3419867 (-) 402 WP_000849705.1 NUDIX domain-containing protein -
  IVB58_RS16185 (IVB58_16135) - 3419882..3420463 (-) 582 WP_001084310.1 TIGR00730 family Rossman fold protein -
  IVB58_RS16190 (IVB58_16140) - 3420621..3421634 (+) 1014 WP_000888321.1 CorA family divalent cation transporter -
  IVB58_RS16195 (IVB58_16145) - 3421704..3421991 (-) 288 WP_000250997.1 STAS domain-containing protein -
  IVB58_RS16200 (IVB58_16150) - 3422003..3422644 (-) 642 WP_001093907.1 ABC transporter substrate-binding protein -
  IVB58_RS16205 (IVB58_16155) - 3422671..3423351 (-) 681 WP_000842362.1 outer membrane lipid asymmetry maintenance protein MlaD -
  IVB58_RS16210 (IVB58_16160) mlaE 3423351..3424127 (-) 777 WP_001091949.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24584.74 Da        Isoelectric Point: 9.7140

>NTDB_id=506235 IVB58_RS16175 WP_000472265.1 3418828..3419463(+) (comF) [Acinetobacter baumannii strain 2016GDAB1]
MFKFLNPQYLFHLLSPCLLCEIGTREKYPLCKECWEQLPWLKQTIQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLLSKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQEKRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIHASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=506235 IVB58_RS16175 WP_000472265.1 3418828..3419463(+) (comF) [Acinetobacter baumannii strain 2016GDAB1]
ATGTTTAAGTTTTTAAACCCCCAGTATCTTTTTCATTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAACACGGGAAAA
ATATCCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCATTCAGCGCAATGACCAGTCTGTTCTTG
TGGCCTGTCACTACGCCTATCCAATTAACCGGATTATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAACCTTA
CTCGCTGAAGTTTTACAGCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCTAAACAACGTTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTCGCCAATCTTTTGAGTAAGCAATTAAAAATACCAGTTTGGCAGCCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGCTC
ACTCAAGAAAAACGGCGTTATCGTCGTGTACTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCGCTAAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

99.052

100

0.991
  comF Acinetobacter baumannii D1279779

98.104

100

0.981