Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   I6L88_RS06735 Genome accession   NZ_CP077404
Coordinates   1385274..1385867 (+) Length   197 a.a.
NCBI ID   WP_002263052.1    Uniprot ID   Q8DVL3
Organism   Streptococcus mutans strain FDAARGOS 1458     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1380274..1390867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L88_RS06705 (I6L88_06705) luxS 1380326..1380808 (+) 483 WP_002279921.1 S-ribosylhomocysteine lyase Regulator
  I6L88_RS06710 (I6L88_06710) - 1380969..1382609 (-) 1641 WP_002279920.1 cell division site-positioning protein MapZ family protein -
  I6L88_RS06715 (I6L88_06715) - 1382625..1383779 (-) 1155 WP_002266358.1 class I SAM-dependent RNA methyltransferase -
  I6L88_RS06725 (I6L88_06725) gpsB 1384229..1384567 (-) 339 WP_002263050.1 cell division regulator GpsB -
  I6L88_RS06730 (I6L88_06730) - 1384673..1385194 (-) 522 WP_002267943.1 DUF1273 domain-containing protein -
  I6L88_RS06735 (I6L88_06735) recU 1385274..1385867 (+) 594 WP_002263052.1 Holliday junction resolvase RecU Machinery gene
  I6L88_RS06740 (I6L88_06740) pbp1a 1385860..1388091 (+) 2232 WP_002267942.1 penicillin-binding protein PBP1A -
  I6L88_RS06745 (I6L88_06745) pepC 1388207..1389541 (-) 1335 WP_002263054.1 aminopeptidase C -
  I6L88_RS06750 (I6L88_06750) nadE 1389654..1390478 (-) 825 WP_002267027.1 ammonia-dependent NAD(+) synthetase -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 22815.28 Da        Isoelectric Point: 10.1831

>NTDB_id=506233 I6L88_RS06735 WP_002263052.1 1385274..1385867(+) (recU) [Streptococcus mutans strain FDAARGOS 1458]
MVNYPHHFIRKQSKPSQISKTINFANRGMSFEAAINATNNYYLSQKIAVIHKKPTPIQIVRVDYPRRSRAKIVEAYFRQA
STTDYSGVYKGYYIDFEAKETRHKTSIPMKNFHAHQIKHMSQVLDQKGICFVLLHFSTLRETYLLPASHLIHFYRIDNGG
KSMPLDYIKKNGYQVNVSAFPQVPYLDIIDKNILGGD

Nucleotide


Download         Length: 594 bp        

>NTDB_id=506233 I6L88_RS06735 WP_002263052.1 1385274..1385867(+) (recU) [Streptococcus mutans strain FDAARGOS 1458]
ATGGTCAACTATCCTCATCATTTCATTCGTAAACAAAGCAAACCTAGTCAAATATCTAAAACAATCAATTTTGCCAATCG
TGGAATGTCCTTTGAAGCAGCTATAAATGCGACAAATAACTACTATTTATCACAAAAAATAGCTGTTATCCATAAAAAAC
CAACTCCTATTCAAATTGTAAGGGTTGATTATCCTAGACGAAGTCGTGCTAAAATTGTTGAGGCTTATTTTAGGCAGGCT
TCAACAACCGACTACTCAGGAGTCTATAAAGGATATTACATTGATTTTGAAGCAAAAGAGACCAGACATAAGACATCTAT
TCCCATGAAAAACTTTCATGCACATCAGATCAAACATATGTCACAAGTTTTAGACCAAAAAGGTATTTGCTTTGTCTTAC
TGCATTTTTCCACACTTAGGGAGACCTATTTGCTTCCAGCCTCCCATCTAATCCATTTTTATCGGATTGATAATGGCGGG
AAGTCCATGCCACTTGATTATATCAAAAAAAATGGTTATCAGGTGAATGTGTCAGCTTTTCCTCAGGTTCCTTACTTAGA
TATTATTGATAAAAACATTTTAGGCGGTGATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(27-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DVL3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

50.254

100

0.503