Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   I6L88_RS06705 Genome accession   NZ_CP077404
Coordinates   1380326..1380808 (+) Length   160 a.a.
NCBI ID   WP_002279921.1    Uniprot ID   -
Organism   Streptococcus mutans strain FDAARGOS 1458     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1375326..1385808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L88_RS06690 (I6L88_06690) rpoZ 1377154..1377471 (-) 318 WP_002263044.1 DNA-directed RNA polymerase subunit omega -
  I6L88_RS06695 (I6L88_06695) gmk 1377495..1378127 (-) 633 WP_002263045.1 guanylate kinase -
  I6L88_RS06700 (I6L88_06700) - 1378574..1380181 (-) 1608 WP_002263046.1 ribonuclease Y -
  I6L88_RS06705 (I6L88_06705) luxS 1380326..1380808 (+) 483 WP_002279921.1 S-ribosylhomocysteine lyase Regulator
  I6L88_RS06710 (I6L88_06710) - 1380969..1382609 (-) 1641 WP_002279920.1 cell division site-positioning protein MapZ family protein -
  I6L88_RS06715 (I6L88_06715) - 1382625..1383779 (-) 1155 WP_002266358.1 class I SAM-dependent RNA methyltransferase -
  I6L88_RS06725 (I6L88_06725) gpsB 1384229..1384567 (-) 339 WP_002263050.1 cell division regulator GpsB -
  I6L88_RS06730 (I6L88_06730) - 1384673..1385194 (-) 522 WP_002267943.1 DUF1273 domain-containing protein -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17966.58 Da        Isoelectric Point: 6.1364

>NTDB_id=506232 I6L88_RS06705 WP_002279921.1 1380326..1380808(+) (luxS) [Streptococcus mutans strain FDAARGOS 1458]
MTKEVTVESFELDHTAVKAPYVRLISEEFGPKGDLITNFDIRLVQPNEDSIPTAGLHTIEHLLAKLIRQRIDGMIDCSPF
GCRTGFHLIMWGKHTTTQIATVIKASLEEIANTISWKDVSGTTIESCGNYKDHSLFSAKEWAKLILKQGISDDPFERHLV

Nucleotide


Download         Length: 483 bp        

>NTDB_id=506232 I6L88_RS06705 WP_002279921.1 1380326..1380808(+) (luxS) [Streptococcus mutans strain FDAARGOS 1458]
ATGACAAAAGAAGTTACTGTTGAAAGCTTTGAACTTGACCACACTGCTGTAAAAGCCCCTTATGTCCGTCTTATTTCAGA
AGAGTTTGGACCTAAAGGCGATCTTATTACCAATTTTGATATTCGCTTAGTACAGCCTAATGAAGACTCTATTCCGACTG
CAGGCCTTCATACTATTGAACATTTACTGGCTAAGCTGATTCGTCAGCGTATTGACGGGATGATTGACTGTTCCCCTTTT
GGCTGTCGTACTGGTTTTCATCTCATCATGTGGGGTAAGCATACAACAACCCAAATAGCCACAGTCATCAAAGCAAGTTT
AGAAGAAATTGCTAATACAATCTCATGGAAAGATGTCTCTGGAACAACTATTGAGTCCTGTGGGAATTACAAAGATCATA
GCCTTTTTTCAGCTAAAGAATGGGCAAAGCTGATTTTAAAACAAGGCATTTCAGATGATCCTTTTGAGCGTCATCTAGTG
TAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(7-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

38.926

93.125

0.362