Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   IVB58_RS08340 Genome accession   NZ_CP065051
Coordinates   1750645..1751025 (+) Length   126 a.a.
NCBI ID   WP_000836907.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 2016GDAB1     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1745645..1756025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IVB58_RS08310 (IVB58_08285) kdsB 1746548..1747309 (+) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  IVB58_RS08315 (IVB58_08290) - 1747321..1748301 (+) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  IVB58_RS08320 (IVB58_08295) - 1748313..1748654 (+) 342 WP_001183024.1 PilZ domain-containing protein -
  IVB58_RS08325 (IVB58_08300) - 1748672..1749445 (+) 774 WP_000497298.1 TatD family hydrolase -
  IVB58_RS08330 (IVB58_08305) - 1749483..1750091 (+) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  IVB58_RS08335 (IVB58_08310) - 1750101..1750655 (+) 555 WP_000841373.1 type II secretion system protein -
  IVB58_RS08340 (IVB58_08315) xcpV 1750645..1751025 (+) 381 WP_000836907.1 type II secretion system minor pseudopilin GspI Machinery gene
  IVB58_RS08345 (IVB58_08320) xcpW 1751025..1751726 (+) 702 WP_000594572.1 type II secretion system minor pseudopilin GspJ Machinery gene
  IVB58_RS08350 (IVB58_08325) gspK 1751726..1752685 (+) 960 WP_000301460.1 type II secretion system minor pseudopilin GspK -
  IVB58_RS08355 (IVB58_08330) - 1752915..1753511 (+) 597 WP_000908452.1 6-carboxytetrahydropterin synthase -
  IVB58_RS08360 (IVB58_08335) ung 1753562..1754275 (+) 714 WP_001177528.1 uracil-DNA glycosylase -
  IVB58_RS08365 (IVB58_08340) - 1754272..1755396 (+) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  IVB58_RS08370 (IVB58_08345) tadA 1755403..1755906 (+) 504 WP_001997771.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13989.27 Da        Isoelectric Point: 10.0060

>NTDB_id=506226 IVB58_RS08340 WP_000836907.1 1750645..1751025(+) (xcpV) [Acinetobacter baumannii strain 2016GDAB1]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEIKQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=506226 IVB58_RS08340 WP_000836907.1 1750645..1751025(+) (xcpV) [Acinetobacter baumannii strain 2016GDAB1]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAGTTTGTGGCAATGAATGAAGTTG
CTATGATGGAGATTAAACAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

99.206

100

0.992