Detailed information NTG0506227

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: IVB58_RS08345
• Genome accession: NZ_CP065051
• Coordinates: 1751025..1751726 (+)
• Length: 233 a.a.
• NCBI ID: WP_000594572.1
• Uniprot ID: A0A009IN88
• Organism: Acinetobacter baumannii strain 2016GDAB1
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1746025..1756726

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IVB58_RS08310 (IVB58_08285)	kdsB	1746548..1747309 (+)	762	WP_000680697.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
IVB58_RS08315 (IVB58_08290)	-	1747321..1748301 (+)	981	WP_001075416.1	DNA polymerase III subunit delta'	-
IVB58_RS08320 (IVB58_08295)	-	1748313..1748654 (+)	342	WP_001183024.1	PilZ domain-containing protein	-
IVB58_RS08325 (IVB58_08300)	-	1748672..1749445 (+)	774	WP_000497298.1	TatD family hydrolase	-
IVB58_RS08330 (IVB58_08305)	-	1749483..1750091 (+)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
IVB58_RS08335 (IVB58_08310)	-	1750101..1750655 (+)	555	WP_000841373.1	type II secretion system protein	-
IVB58_RS08340 (IVB58_08315)	xcpV	1750645..1751025 (+)	381	WP_000836907.1	type II secretion system minor pseudopilin GspI	Machinery gene
IVB58_RS08345 (IVB58_08320)	xcpW	1751025..1751726 (+)	702	WP_000594572.1	type II secretion system minor pseudopilin GspJ	Machinery gene
IVB58_RS08350 (IVB58_08325)	gspK	1751726..1752685 (+)	960	WP_000301460.1	type II secretion system minor pseudopilin GspK	-
IVB58_RS08355 (IVB58_08330)	-	1752915..1753511 (+)	597	WP_000908452.1	6-carboxytetrahydropterin synthase	-
IVB58_RS08360 (IVB58_08335)	ung	1753562..1754275 (+)	714	WP_001177528.1	uracil-DNA glycosylase	-
IVB58_RS08365 (IVB58_08340)	-	1754272..1755396 (+)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
IVB58_RS08370 (IVB58_08345)	tadA	1755403..1755906 (+)	504	WP_001997771.1	tRNA adenosine(34) deaminase TadA	-
IVB58_RS08375 (IVB58_08350)	-	1755976..1756419 (+)	444	WP_001246675.1	SRPBCC family protein	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26613.59 Da
• Isoelectric Point: 9.5501

>NTDB_id=506227 IVB58_RS08345 WP_000594572.1 1751025..1751726(+) (xcpW) [Acinetobacter baumannii strain 2016GDAB1]
MIKNKYIHIRSFAARLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=506227 IVB58_RS08345 WP_000594572.1 1751025..1751726(+) (xcpW) [Acinetobacter baumannii strain 2016GDAB1]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTGCTGCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGTAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

3D structure

• AlphaFold DB: A0A009IN88

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	99.142	100	0.991