Detailed information NTG0506176

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: I2D83_RS07185
• Genome accession: NZ_CP065044
• Coordinates: 1613125..1613970 (+)
• Length: 281 a.a.
• NCBI ID: WP_205947788.1
• Uniprot ID: -
• Organism: Pectobacterium aroidearum strain L6
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1608125..1618970

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I2D83_RS07155 (I2D83_07155)	gspI	1608518..1608883 (+)	366	WP_015841044.1	type II secretion system minor pseudopilin GspI	-
I2D83_RS07160 (I2D83_07160)	gspJ	1608883..1609533 (+)	651	WP_181829033.1	type II secretion system minor pseudopilin GspJ	-
I2D83_RS07165 (I2D83_07165)	gspK	1609530..1610516 (+)	987	WP_015841042.1	type II secretion system minor pseudopilin GspK	-
I2D83_RS07170 (I2D83_07170)	gspL	1610513..1611790 (+)	1278	WP_205947785.1	type II secretion system protein GspL	-
I2D83_RS07175 (I2D83_07175)	gspM	1611787..1612281 (+)	495	WP_205947786.1	type II secretion system protein GspM	-
I2D83_RS07180 (I2D83_07180)	-	1612271..1613017 (+)	747	WP_205947787.1	type II secretion system protein N	-
I2D83_RS07185 (I2D83_07185)	pilD	1613125..1613970 (+)	846	WP_205947788.1	prepilin peptidase	Machinery gene
I2D83_RS07190 (I2D83_07190)	ypdK	1614113..1614187 (-)	75	WP_099606229.1	membrane protein YpdK	-
I2D83_RS07195 (I2D83_07195)	-	1614544..1615569 (-)	1026	WP_015841037.1	LLM class flavin-dependent oxidoreductase	-
I2D83_RS07200 (I2D83_07200)	-	1616045..1617109 (+)	1065	WP_205947789.1	ABC transporter substrate-binding protein	-
I2D83_RS07205 (I2D83_07205)	-	1617106..1618143 (+)	1038	WP_181838176.1	FecCD family ABC transporter permease	-
I2D83_RS07210 (I2D83_07210)	-	1618145..1618915 (+)	771	WP_205947790.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 281 a.a.
• Molecular weight: 31261.37 Da
• Isoelectric Point: 7.1428

>NTDB_id=506176 I2D83_RS07185 WP_205947788.1 1613125..1613970(+) (pilD) [Pectobacterium aroidearum strain L6]
MDDLREFALVFPAWWYGALGVLGLIVGSFLNVVIYRLPIMLERRWRQDIELQTGVTDVEHVTSYNLCWPPSSCPHCQQAI
AVKDNIPLFSWLWLRGRSRCCHQPVSVQYPLVEVITMLAFLVAGLLWLPGMALCGALILLSFLVVLTVIDIKTLLLPDVL
TLSLLWMGLLFNLSETFVPLRDAVVGAMAGYLSLWLLYWVFKYATGKEALGYGDFKLLAALGAWLGWQALPNLVLVAALS
GLVVTLIWRGVRKEDTAKPLAFGPWLAIGGVFGVIINGLYL

Nucleotide

• Length: 846 bp

>NTDB_id=506176 I2D83_RS07185 WP_205947788.1 1613125..1613970(+) (pilD) [Pectobacterium aroidearum strain L6]
GTGGACGATTTAAGGGAATTCGCACTGGTATTTCCGGCATGGTGGTATGGTGCGCTGGGCGTATTGGGCTTGATTGTTGG
CAGTTTTCTGAACGTCGTGATTTACCGCCTGCCGATTATGTTAGAACGCCGCTGGCGGCAGGACATCGAACTGCAAACGG
GTGTGACCGATGTCGAGCATGTGACGAGTTACAACCTGTGTTGGCCGCCTTCGTCTTGCCCGCACTGTCAGCAGGCGATT
GCGGTGAAAGATAACATCCCGTTATTCAGTTGGCTGTGGCTGCGCGGCCGCTCCCGCTGCTGTCATCAGCCAGTGTCTGT
GCAGTATCCGCTGGTGGAAGTAATTACGATGCTGGCTTTTCTGGTCGCAGGGTTACTGTGGTTGCCCGGCATGGCGTTAT
GCGGGGCGCTGATTCTGCTGTCCTTTCTGGTGGTTTTGACCGTCATTGATATAAAAACGTTACTGCTGCCAGATGTGCTT
ACGCTTTCGCTCTTGTGGATGGGACTGCTGTTTAATCTGTCGGAGACCTTTGTCCCATTACGCGATGCCGTAGTAGGCGC
GATGGCGGGCTATTTGTCCCTGTGGCTACTTTATTGGGTATTTAAATATGCCACAGGCAAAGAAGCGCTAGGGTATGGTG
ATTTTAAGTTACTCGCCGCGCTGGGTGCCTGGCTGGGCTGGCAGGCATTGCCGAATCTGGTCTTGGTGGCGGCGCTGAGC
GGGCTGGTCGTTACTCTCATCTGGCGCGGGGTGCGTAAAGAAGATACGGCTAAACCGTTGGCCTTTGGCCCCTGGCTGGC
GATTGGCGGCGTGTTCGGTGTGATAATAAACGGACTCTATCTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-123)

• Type IV leader peptidase family (Peptidase_A24) (137-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	50.741	96.085	0.488
pilD	Neisseria gonorrhoeae MS11	49.805	91.459	0.456
pilD	Vibrio campbellii strain DS40M4	46.85	90.391	0.423
pilD	Acinetobacter baumannii D1279779	42.336	97.509	0.413
pilD	Acinetobacter nosocomialis M2	42.336	97.509	0.413