Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   IPQ37_RS02075 Genome accession   NZ_CP065041
Coordinates   426377..426973 (-) Length   198 a.a.
NCBI ID   WP_005297642.1    Uniprot ID   A0A2T3QMJ2
Organism   Photobacterium damselae subsp. damselae strain AS-16-0963-3     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 421377..431973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IPQ37_RS02060 (IPQ37_02060) - 422469..423482 (+) 1014 WP_005297636.1 Fe(3+) ABC transporter substrate-binding protein -
  IPQ37_RS02065 (IPQ37_02065) - 423638..425263 (+) 1626 WP_115059224.1 ABC transporter permease -
  IPQ37_RS02070 (IPQ37_02070) - 425266..426303 (+) 1038 WP_115060366.1 ABC transporter ATP-binding protein -
  IPQ37_RS02075 (IPQ37_02075) opaR 426377..426973 (-) 597 WP_005297642.1 TetR/AcrR family transcriptional regulator Regulator
  IPQ37_RS02080 (IPQ37_02080) hpt 427194..427730 (+) 537 WP_005297644.1 hypoxanthine phosphoribosyltransferase -
  IPQ37_RS02085 (IPQ37_02085) can 427805..428476 (-) 672 WP_005297646.1 carbonate dehydratase -
  IPQ37_RS02090 (IPQ37_02090) - 428575..429498 (+) 924 WP_237042623.1 ABC transporter ATP-binding protein -
  IPQ37_RS02095 (IPQ37_02095) - 429495..430265 (+) 771 WP_065171758.1 ABC transporter permease -
  IPQ37_RS02100 (IPQ37_02100) panC 430381..431271 (-) 891 WP_065171757.1 pantoate--beta-alanine ligase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22812.08 Da        Isoelectric Point: 7.1177

>NTDB_id=506135 IPQ37_RS02075 WP_005297642.1 426377..426973(-) (opaR) [Photobacterium damselae subsp. damselae strain AS-16-0963-3]
MDMVIKRTRTRLSPEKRREQLLNSALDVFARRGIGRGGHADIAEMANVSVATVFNYFPTREDLVEQVLIHVESRFNKLLT
HSLNDEMPTAKAKLTNLTDCLIKAVIEQHDWLKVWFEWSTSVRDDIWPLFIKTNKNNLQKLTSVFEQGLTAGEFSRSQSA
SDLAHMFHGTCYVLYLQTHLTLDPEIMQRQADSYLQSL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=506135 IPQ37_RS02075 WP_005297642.1 426377..426973(-) (opaR) [Photobacterium damselae subsp. damselae strain AS-16-0963-3]
ATGGACATGGTGATTAAGCGTACTCGTACTCGCTTATCTCCAGAAAAACGTCGAGAGCAGCTACTCAATAGCGCACTAGA
TGTTTTTGCTCGTCGTGGTATTGGCCGAGGGGGCCACGCAGATATCGCGGAAATGGCAAATGTCTCTGTTGCGACCGTTT
TCAATTATTTTCCAACTCGCGAAGATTTAGTAGAACAGGTATTAATTCACGTTGAATCTCGTTTCAATAAACTACTGACA
CACTCTCTCAACGATGAAATGCCAACAGCAAAAGCCAAACTGACTAACCTTACCGATTGCTTAATTAAAGCTGTTATAGA
GCAGCACGATTGGCTAAAAGTCTGGTTTGAATGGAGTACATCAGTACGTGATGATATTTGGCCACTGTTTATTAAAACCA
ATAAAAATAACTTACAAAAGTTAACTTCGGTTTTTGAACAGGGATTAACGGCTGGAGAATTTAGTCGCTCTCAATCTGCA
TCAGATTTAGCGCATATGTTTCACGGTACCTGTTATGTGCTGTACTTACAAACGCACCTAACCTTAGACCCTGAAATCAT
GCAGCGACAAGCTGATAGCTATTTACAGAGCCTGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(21-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T3QMJ2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

48.485

100

0.485
  hapR Vibrio cholerae C6706

48.241

100

0.485
  hapR Vibrio cholerae strain A1552

48.241

100

0.485