Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   I1A55_RS07880 Genome accession   NZ_CP065040
Coordinates   1553766..1554668 (+) Length   300 a.a.
NCBI ID   WP_017367240.1    Uniprot ID   -
Organism   Bacillus altitudinis strain Ba1449     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1548766..1559668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I1A55_RS07860 - 1549432..1551168 (+) 1737 WP_050827260.1 hypothetical protein -
  I1A55_RS07865 - 1551165..1551440 (+) 276 WP_048002829.1 FlhB-like flagellar biosynthesis protein -
  I1A55_RS07870 sucC 1551617..1552777 (+) 1161 WP_008344824.1 ADP-forming succinate--CoA ligase subunit beta -
  I1A55_RS07875 sucD 1552800..1553702 (+) 903 WP_007499624.1 succinate--CoA ligase subunit alpha -
  I1A55_RS07880 dprA 1553766..1554668 (+) 903 WP_017367240.1 DNA-processing protein DprA Machinery gene
  I1A55_RS07885 topA 1554863..1556938 (+) 2076 WP_046526653.1 type I DNA topoisomerase -
  I1A55_RS07890 trmFO 1557009..1558313 (+) 1305 WP_007499618.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  I1A55_RS07895 xerC 1558376..1559293 (+) 918 WP_007499616.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34063.39 Da        Isoelectric Point: 8.2776

>NTDB_id=506092 I1A55_RS07880 WP_017367240.1 1553766..1554668(+) (dprA) [Bacillus altitudinis strain Ba1449]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETHHFKQDRSLQKIDFTRLQQAEENEFPIFQHIVQAYLKQNIHM
IPITSPLYPSSLKHIYDPPPVLFLKGNVTYLNEEKSLGVVGTRVPSSYGEACVKKIVGELVEEDWMIVSGLAKGIDGLAH
KECIRKKGKTIGVVAGGFQHVYPKEHVQMAQYMGEHHLLLSEHPPYIKPEKWHFPMRNRLISALTRGTIVVQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDSNSIGPARLIQQGAKLVHSTKDILEEFSLSGVQYTELT

Nucleotide


Download         Length: 903 bp        

>NTDB_id=506092 I1A55_RS07880 WP_017367240.1 1553766..1554668(+) (dprA) [Bacillus altitudinis strain Ba1449]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCTTTGTTAACAAAATGGTGGAA
AGTCGATCCTGAGCTATATATAAATGAAGAAACACATCATTTCAAACAGGATCGATCATTACAAAAGATCGACTTTACCC
GCTTACAACAAGCTGAAGAAAATGAATTCCCCATTTTTCAACACATCGTTCAAGCCTATTTAAAGCAAAATATTCACATG
ATTCCCATCACATCACCTTTATATCCCAGCTCACTAAAACACATTTATGATCCTCCCCCAGTATTATTCCTAAAAGGAAA
CGTTACCTATTTAAATGAAGAAAAAAGTTTAGGTGTAGTAGGTACACGAGTGCCATCCTCTTATGGAGAAGCGTGCGTGA
AGAAAATTGTTGGAGAACTTGTAGAGGAAGATTGGATGATTGTGAGCGGTTTAGCAAAAGGAATTGATGGACTTGCACAC
AAAGAGTGCATAAGAAAAAAAGGAAAAACGATTGGTGTTGTAGCTGGCGGCTTTCAACATGTATATCCAAAAGAACATGT
GCAAATGGCTCAATATATGGGAGAACATCATTTACTGTTGTCAGAGCACCCGCCTTATATCAAACCAGAAAAATGGCATT
TTCCAATGAGAAACCGATTAATTAGTGCCCTGACAAGAGGAACCATCGTGGTCCAGTGCAAAGAAAAGAGCGGTTCGCTT
ATTACAGCCTACCAGGCATTAGAGCAAGGAAAAGAAGTGTTTGCTGTTGCAGGATCGATCTTTGATTCTAATTCTATAGG
TCCAGCTAGATTGATTCAGCAAGGTGCCAAGCTTGTTCATTCAACGAAGGATATTTTAGAGGAATTCTCCTTGAGCGGTG
TTCAATATACTGAACTCACATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

54.704

95.667

0.523
  dprA Legionella pneumophila strain ERS1305867

37.377

100

0.38
  dprA Lactococcus lactis subsp. cremoris KW2

39.721

95.667

0.38