Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   MY9_RS11190 Genome accession   NC_017743
Coordinates   2246756..2247376 (+) Length   206 a.a.
NCBI ID   WP_014664374.1    Uniprot ID   -
Organism   Bacillus sp. JS     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2241756..2252376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MY9_RS11150 (MY9_2228) - 2242887..2243393 (-) 507 WP_041521517.1 PTS glucose transporter subunit IIA -
  MY9_RS11155 (MY9_2229) - 2243532..2243951 (+) 420 WP_014664369.1 Hsp20/alpha crystallin family protein -
  MY9_RS11160 (MY9_2230) - 2243972..2244349 (-) 378 WP_014664370.1 YppG family protein -
  MY9_RS11165 (MY9_2231) - 2244536..2244724 (+) 189 WP_003230690.1 YppF family protein -
  MY9_RS11170 (MY9_2232) - 2244764..2245135 (-) 372 WP_014664371.1 YppE family protein -
  MY9_RS11175 (MY9_2233) - 2245181..2245426 (-) 246 WP_014664372.1 DUF5446 family protein -
  MY9_RS11180 (MY9_2234) sspM 2245624..2245728 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  MY9_RS11185 (MY9_2235) - 2245753..2246715 (-) 963 WP_040082801.1 DUF2515 domain-containing protein -
  MY9_RS11190 (MY9_2236) recU 2246756..2247376 (+) 621 WP_014664374.1 Holliday junction resolvase RecU Machinery gene
  MY9_RS11195 (MY9_2237) - 2247398..2250142 (+) 2745 WP_014664375.1 PBP1A family penicillin-binding protein -
  MY9_RS11200 (MY9_2238) - 2250216..2250710 (-) 495 WP_014664376.1 YpoC family protein -
  MY9_RS11205 (MY9_2239) nth 2250707..2251366 (-) 660 WP_014664377.1 endonuclease III -
  MY9_RS11210 (MY9_2240) dnaD 2251385..2252083 (-) 699 WP_014664378.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23902.03 Da        Isoelectric Point: 9.6240

>NTDB_id=50608 MY9_RS11190 WP_014664374.1 2246756..2247376(+) (recU) [Bacillus sp. JS]
MIRYPNGKTFQPKHSVSSQSSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEEAAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=50608 MY9_RS11190 WP_014664374.1 2246756..2247376(+) (recU) [Bacillus sp. JS]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAGCAGTCAGAAAAGGGCCCCGTC
ATACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAT
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGACGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTCCATGACCATCAAATCGAACATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAGCGGCTTATCCGATTTCTCTTGGATACGCACCTAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCTTCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

99.029

100

0.99

Multiple sequence alignment