Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   MY9_RS09620 Genome accession   NC_017743
Coordinates   1935454..1936584 (-) Length   376 a.a.
NCBI ID   WP_014664083.1    Uniprot ID   -
Organism   Bacillus sp. JS     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1916806..1938729 1935454..1936584 within 0


Gene organization within MGE regions


Location: 1916806..1938729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MY9_RS09505 (MY9_1886) - 1916806..1917078 (+) 273 WP_014664062.1 YmzC family protein -
  MY9_RS09510 (MY9_1887) - 1917160..1917390 (+) 231 WP_003245262.1 hypothetical protein -
  MY9_RS09515 (MY9_1888) nrdI 1917634..1918026 (+) 393 WP_014664064.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -
  MY9_RS09520 (MY9_1889) nrdE 1917986..1920088 (+) 2103 WP_014664065.1 class 1b ribonucleoside-diphosphate reductase subunit alpha -
  MY9_RS09525 (MY9_1890) nrdF 1920106..1921095 (+) 990 WP_014664066.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  MY9_RS09530 (MY9_1891) - 1921144..1921764 (+) 621 WP_014664067.1 hypothetical protein -
  MY9_RS09535 (MY9_1892) cwlC 1921828..1922595 (-) 768 WP_014664068.1 sporulation-specific N-acetylmuramoyl-L-alanine amidase -
  MY9_RS09540 (MY9_1896) spoVK 1923224..1924192 (+) 969 WP_041521344.1 stage V sporulation protein K -
  MY9_RS09550 (MY9_1897) hflX 1924325..1925587 (+) 1263 WP_040083090.1 GTPase HflX -
  MY9_RS09555 (MY9_1898) - 1925605..1926870 (+) 1266 WP_014664074.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -
  MY9_RS09560 (MY9_1899) glnR 1926980..1927387 (+) 408 WP_014664075.1 transcriptional repressor GlnR -
  MY9_RS09565 (MY9_1900) glnA 1927446..1928780 (+) 1335 WP_014664076.1 type I glutamate--ammonia ligase -
  MY9_RS21555 - 1928865..1929010 (+) 146 Protein_1830 peptidoglycan-binding protein -
  MY9_RS09570 (MY9_1901) - 1929049..1929348 (-) 300 WP_014664077.1 contact-dependent growth inhibition system immunity protein -
  MY9_RS09575 (MY9_1902) - 1929402..1929710 (-) 309 WP_014664078.1 hypothetical protein -
  MY9_RS22010 (MY9_1903) - 1929731..1931596 (-) 1866 WP_014664079.1 T7SS effector LXG polymorphic toxin -
  MY9_RS21125 - 1932496..1932698 (+) 203 Protein_1834 phage holin family protein -
  MY9_RS09595 (MY9_1905) - 1932741..1933242 (+) 502 Protein_1835 N-acetylmuramoyl-L-alanine amidase family protein -
  MY9_RS09600 (MY9_1906) - 1933970..1934428 (-) 459 WP_014664081.1 SMI1/KNR4 family protein -
  MY9_RS09605 (MY9_1907) - 1934441..1934665 (-) 225 Protein_1837 HNH/ENDO VII family nuclease -
  MY9_RS20940 (MY9_1908) - 1934715..1935292 (+) 578 Protein_1838 UV damage repair protein UvrX -
  MY9_RS21735 - 1935321..1935464 (-) 144 WP_153801665.1 hypothetical protein -
  MY9_RS09620 (MY9_1909) rapC 1935454..1936584 (-) 1131 WP_014664083.1 tetratricopeptide repeat protein Regulator
  MY9_RS09630 (MY9_1910) - 1936872..1937384 (+) 513 WP_014664084.1 GNAT family protein -
  MY9_RS09635 (MY9_1911) - 1937662..1938303 (+) 642 WP_014664085.1 DUF3885 domain-containing protein -
  MY9_RS09640 (MY9_1912) - 1938565..1938729 (+) 165 WP_003231681.1 hypothetical protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44149.90 Da        Isoelectric Point: 5.8562

>NTDB_id=50607 MY9_RS09620 WP_014664083.1 1935454..1936584(-) (rapC) [Bacillus sp. JS]
MEQLIPSSAVGVKINEWYKYIRMFAVPDAEILKAEVEEEIKHMKEDQDLLLYYSLMCFRHQLMLDYLEPKSLNEERPKIS
DLLEKIESKQTKLKGVLEYYCNFFRGMHEFDKKEYIKAIRSYKIAEKKLALVTDEIERAEFYFKMAEVYYHMKQTHVSMH
YAEAALNIYKDQKTYTVRRIQCAFVVAGNFDDLEGHEKAVPHLQGALKDSKAINKHKLIGASLYNLGNCYYKMKEYDKAA
EYIGQAVSLYENDKSDLLPHTLFTLTQIYFKMKDIEKGFILYKKGIEKAQAINDDVLVAEFNYLKALYIDSIDKRTVFQT
FSVLKDNVMYPDLEELALDTANYCKEIGQFENSTTFFDVMVDARIQIQRGECLYEI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=50607 MY9_RS09620 WP_014664083.1 1935454..1936584(-) (rapC) [Bacillus sp. JS]
ATGGAGCAATTAATTCCGTCATCCGCAGTTGGAGTTAAAATCAATGAGTGGTATAAATACATACGGATGTTCGCCGTTCC
AGATGCAGAGATATTAAAAGCAGAGGTTGAAGAAGAAATAAAACATATGAAGGAAGACCAAGACTTATTGTTGTATTATT
CACTAATGTGTTTTCGTCATCAGCTAATGCTCGATTACCTTGAACCTAAGTCCTTGAATGAAGAACGCCCTAAAATTTCA
GACTTATTAGAAAAGATTGAAAGCAAACAAACAAAACTTAAAGGTGTCCTGGAATACTACTGCAATTTCTTTAGAGGAAT
GCACGAATTTGATAAGAAGGAATATATAAAAGCAATAAGGTCATATAAAATTGCTGAGAAAAAGCTCGCTTTAGTAACAG
ATGAAATTGAACGAGCAGAGTTCTATTTTAAAATGGCAGAAGTGTATTATCACATGAAACAAACCCATGTATCAATGCAC
TATGCTGAAGCAGCCCTTAACATTTATAAAGACCAAAAAACTTATACTGTTCGCCGAATACAATGTGCTTTTGTTGTAGC
AGGCAACTTTGATGATCTGGAAGGTCATGAAAAAGCAGTTCCGCATCTTCAGGGAGCCTTAAAAGACTCAAAAGCCATAA
ACAAACACAAGCTAATTGGTGCATCATTATATAATTTGGGAAACTGTTATTATAAGATGAAAGAGTATGACAAAGCTGCT
GAATATATTGGACAAGCAGTCTCATTGTACGAAAACGATAAAAGTGATCTTCTCCCTCACACGTTATTTACACTGACACA
AATTTACTTCAAAATGAAGGATATTGAAAAAGGCTTTATTCTTTATAAAAAAGGAATCGAGAAAGCACAAGCCATAAACG
ATGATGTCTTAGTTGCTGAGTTTAATTACTTAAAGGCTTTATATATCGACTCTATAGATAAACGCACAGTTTTTCAAACT
TTTTCTGTACTAAAAGATAATGTTATGTATCCAGATTTAGAGGAATTAGCACTCGACACGGCTAATTATTGTAAGGAGAT
AGGGCAATTTGAAAACTCAACCACCTTTTTTGACGTAATGGTGGACGCCCGAATCCAAATACAAAGAGGAGAGTGTTTAT
ATGAAATTTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_1)

(222-253)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

50.532

100

0.505
  rapF Bacillus subtilis subsp. subtilis str. 168

45.119

100

0.455

Multiple sequence alignment