Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   I6L86_RS05100 Genome accession   NZ_CP077259
Coordinates   1083812..1084861 (+) Length   349 a.a.
NCBI ID   WP_000653760.1    Uniprot ID   -
Organism   Streptococcus mitis strain FDAARGOS 1456     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1078812..1089861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L86_RS05070 (I6L86_05070) - 1079580..1079981 (+) 402 WP_000114425.1 hypothetical protein -
  I6L86_RS05075 (I6L86_05075) - 1080061..1080693 (+) 633 WP_000756346.1 DJ-1/PfpI family protein -
  I6L86_RS05080 (I6L86_05080) dnaJ 1080892..1082028 (+) 1137 WP_001066310.1 molecular chaperone DnaJ -
  I6L86_RS05085 (I6L86_05085) - 1082309..1082596 (-) 288 WP_000777752.1 hypothetical protein -
  I6L86_RS05090 (I6L86_05090) - 1082606..1083016 (-) 411 WP_001278319.1 HIT family protein -
  I6L86_RS05095 (I6L86_05095) pptA 1083084..1083815 (+) 732 WP_000889948.1 ABC transporter ATP-binding protein Regulator
  I6L86_RS05100 (I6L86_05100) pptB 1083812..1084861 (+) 1050 WP_000653760.1 ABC transporter permease Regulator
  I6L86_RS05105 (I6L86_05105) - 1084923..1085252 (-) 330 WP_000132585.1 hypothetical protein -
  I6L86_RS05110 (I6L86_05110) comE/blpR 1085548..1086294 (+) 747 WP_001219140.1 response regulator transcription factor Regulator
  I6L86_RS05115 (I6L86_05115) - 1086299..1087648 (+) 1350 WP_000409121.1 sensor histidine kinase -
  I6L86_RS05120 (I6L86_05120) - 1088956..1089360 (+) 405 WP_000846948.1 hypothetical protein -
  I6L86_RS05125 (I6L86_05125) - 1089381..1089608 (+) 228 WP_001093254.1 bacteriocin class II family protein -

Sequence


Protein


Download         Length: 349 a.a.        Molecular weight: 40414.63 Da        Isoelectric Point: 10.0890

>NTDB_id=506036 I6L86_RS05100 WP_000653760.1 1083812..1084861(+) (pptB) [Streptococcus mitis strain FDAARGOS 1456]
MKDLFLKRKQAFRKECLGYLRYVLNDHFVLFLLVLLGFLAYQYSQLLQHFPENHWPILLFVGITSILLLLWGGIVTYMEA
PDKLFLLVGEEEIKLHLKRQIATSLVFWLFVQTLFLLLFAPLFLAMGSGLPVFLVYVLLLGVGKYLLFRQKASKFFTETG
LDWDYVISQESKRKQVLLRFFALFTQVKGISNSIKRRAYLDFILKVVQKVPGKIWQNLYLRSYLRNGDLFALSLRLLLLS
LLAQVFIEQAWIATAVVVLFNYLLLFQLLALYHAFDYQYLTQLFPLDKGQKEKGLQAVVRGLTSLVLVVELVVGLITFQE
KLALLALLGAGLVLLVLYLPYQVKRQMQD

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=506036 I6L86_RS05100 WP_000653760.1 1083812..1084861(+) (pptB) [Streptococcus mitis strain FDAARGOS 1456]
ATGAAAGACTTGTTTTTAAAGAGAAAGCAGGCTTTTCGTAAGGAGTGTCTTGGTTATCTGCGCTATGTTCTCAATGATCA
CTTTGTCTTGTTCCTGCTTGTCCTGCTGGGATTTCTAGCCTACCAGTACAGTCAACTCTTACAACATTTTCCTGAAAATC
ATTGGCCTATCCTTTTGTTTGTAGGGATTACATCTATTTTACTTTTGCTTTGGGGTGGGATTGTCACTTATATGGAGGCA
CCAGACAAGCTCTTTCTCTTGGTCGGAGAAGAGGAAATCAAGCTCCATCTAAAGCGTCAAATTGCCACTTCCCTAGTCTT
TTGGCTCTTTGTACAAACCCTTTTCTTGCTTTTATTTGCGCCCTTATTTTTGGCAATGGGTTCTGGCTTGCCAGTTTTTC
TGGTCTATGTGCTCCTATTGGGGGTAGGGAAATATCTGCTCTTTCGTCAAAAAGCCAGCAAATTTTTCACTGAAACTGGA
CTGGACTGGGACTATGTCATTTCCCAAGAAAGCAAGCGTAAGCAAGTCTTGCTTCGTTTCTTTGCTCTCTTTACGCAGGT
CAAGGGAATTTCAAACAGCATTAAGCGTCGTGCCTATCTGGACTTTATCCTAAAGGTTGTTCAGAAGGTGCCTGGGAAGA
TTTGGCAAAATCTCTATCTGCGTTCTTATCTGCGAAATGGAGACCTCTTTGCCCTCAGTCTCCGTCTGCTCCTACTTTCC
TTGCTGGCGCAGGTCTTTATCGAGCAAGCTTGGATTGCGACAGCAGTGGTGGTTCTCTTTAACTACCTCTTGCTCTTCCA
GTTGCTGGCCCTCTATCATGCCTTTGACTACCAGTATTTGACCCAACTCTTTCCACTGGACAAGGGGCAAAAGGAAAAAG
GCTTGCAGGCGGTAGTCCGAGGATTGACCAGTTTGGTCTTAGTAGTGGAATTAGTTGTTGGGTTGATTACCTTCCAAGAA
AAACTAGCCCTTCTAGCCTTACTGGGAGCTGGTTTGGTTTTACTAGTCTTGTACCTACCTTATCAGGTCAAACGTCAGAT
GCAGGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

46.857

100

0.47

  pptB Streptococcus thermophilus LMD-9

46

100

0.461