Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   I6L85_RS10560 Genome accession   NZ_CP077248
Coordinates   2152812..2153897 (+) Length   361 a.a.
NCBI ID   WP_105026381.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS 1455     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2147812..2158897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L85_RS10535 (I6L85_10535) pgsA 2148099..2148638 (-) 540 WP_008808050.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  I6L85_RS10540 (I6L85_10540) rodZ 2148647..2149477 (-) 831 WP_111723077.1 cytoskeleton protein RodZ -
  I6L85_RS10545 (I6L85_10545) - 2149724..2151019 (-) 1296 WP_111723076.1 pitrilysin family protein -
  I6L85_RS10550 (I6L85_10550) - 2151019..2152266 (-) 1248 WP_111723075.1 pitrilysin family protein -
  I6L85_RS10555 (I6L85_10555) yaaA 2152421..2152810 (+) 390 WP_008808046.1 S4 domain-containing protein YaaA -
  I6L85_RS10560 (I6L85_10560) recF 2152812..2153897 (+) 1086 WP_105026381.1 DNA replication/repair protein RecF Machinery gene

Sequence

Protein


Download         Length: 361 a.a.        Molecular weight: 41831.12 Da        Isoelectric Point: 9.0338

>NTDB_id=505959 I6L85_RS10560 WP_105026381.1 2152812..2153897(+) (recF) [Streptococcus gordonii strain FDAARGOS 1455]
MWLKSLTLKHFRNYQDAEINFHSGLNVFLGQNAQGKTNILESIYFLALTRSHRTRSDKDFIHFQEKDLKVSGILEKKTGT
IPLDIELTAKGRITKINHLKQNRLSDYIGTMNVVLFAPEDLQLIKGSPSLRRKFIDIELGQIKPLYLADLSNYNHVLKQR
NSYLKNSQKIDENFLSVLDEQLIEYGCRVVKHRLDFLKKLEIFAQEKHLDISQKKETLTIDYLSSVPLQDIDSIEESFRQ
SLSKNRKRDLFKQNTGVGPHRDDIAFFINQMDANYGSQGQHRSVVLSLKLAEIKLIENITKESPILLLDDVMSELDNDRQ
LKLLETISQEIQTFITTTTLEHLKNLPKDIKIFEILNGHIK

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=505959 I6L85_RS10560 WP_105026381.1 2152812..2153897(+) (recF) [Streptococcus gordonii strain FDAARGOS 1455]
ATGTGGCTAAAATCACTGACTCTTAAACATTTTCGTAATTATCAAGACGCGGAAATCAACTTTCACTCTGGTCTAAACGT
TTTTCTTGGTCAAAATGCACAAGGAAAAACAAATATTCTAGAATCAATTTATTTCTTAGCATTGACTCGTAGTCATCGAA
CTAGATCAGATAAAGATTTTATTCATTTTCAAGAAAAAGATCTCAAAGTATCAGGTATCCTTGAAAAAAAGACAGGAACA
ATTCCTCTTGACATCGAGTTGACAGCTAAGGGACGTATTACTAAAATCAACCATCTCAAGCAAAATAGACTTTCCGACTA
TATTGGGACAATGAATGTTGTTCTGTTTGCGCCAGAAGATTTACAACTTATTAAAGGTTCGCCTTCATTAAGACGAAAAT
TTATAGACATTGAATTGGGGCAAATCAAGCCTCTTTATCTAGCAGATCTTTCCAATTACAATCATGTTCTTAAACAAAGA
AATTCTTATCTAAAGAACAGTCAAAAAATTGATGAGAATTTTCTATCTGTTTTAGATGAACAGCTTATTGAATATGGTTG
TCGTGTGGTCAAACATCGCTTAGACTTCTTAAAAAAACTCGAAATATTCGCCCAGGAAAAACACCTTGATATCTCACAAA
AAAAAGAAACTCTAACTATTGACTATCTATCCTCTGTACCTTTACAAGATATTGACAGTATTGAAGAAAGTTTTAGACAA
AGCCTAAGTAAAAATCGAAAAAGAGATTTATTTAAACAAAATACTGGTGTAGGTCCTCATCGAGATGATATAGCTTTCTT
TATCAATCAAATGGATGCTAATTATGGAAGTCAGGGGCAACACAGAAGTGTGGTACTCTCTCTTAAATTAGCAGAAATAA
AATTGATTGAAAATATAACAAAAGAATCTCCTATCCTCCTGCTTGACGATGTGATGAGTGAACTTGACAATGATCGTCAA
CTTAAATTGCTAGAAACAATTTCTCAAGAAATACAAACTTTTATTACCACAACTACTTTGGAACACCTAAAAAACTTACC
TAAAGATATAAAAATATTTGAAATTTTAAATGGGCACATAAAATAG

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-355)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

71.229

99.169

0.706
  recF Bacillus subtilis subsp. subtilis str. 168

44.959

100

0.457