Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   I6L85_RS07810 Genome accession   NZ_CP077248
Coordinates   1565984..1566586 (+) Length   200 a.a.
NCBI ID   WP_008808581.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS 1455     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1560984..1571586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L85_RS07780 (I6L85_07780) luxS 1561316..1561798 (+) 483 WP_217002523.1 S-ribosylhomocysteine lyase Regulator
  I6L85_RS07785 (I6L85_07785) - 1561855..1563267 (-) 1413 WP_048778745.1 cell division site-positioning protein MapZ family protein -
  I6L85_RS07790 (I6L85_07790) - 1563273..1564430 (-) 1158 WP_111723388.1 class I SAM-dependent RNA methyltransferase -
  I6L85_RS07800 (I6L85_07800) gpsB 1564971..1565321 (-) 351 WP_012000085.1 cell division regulator GpsB -
  I6L85_RS07805 (I6L85_07805) - 1565391..1565918 (-) 528 WP_111723387.1 DUF1273 domain-containing protein -
  I6L85_RS07810 (I6L85_07810) recU 1565984..1566586 (+) 603 WP_008808581.1 Holliday junction resolvase RecU Machinery gene
  I6L85_RS07815 (I6L85_07815) pbp1a 1566579..1568717 (+) 2139 WP_111723386.1 penicillin-binding protein PBP1A -
  I6L85_RS07820 (I6L85_07820) pepC 1568829..1570163 (-) 1335 WP_111723385.1 aminopeptidase C -
  I6L85_RS07825 (I6L85_07825) - 1570242..1570802 (-) 561 WP_111723384.1 GNAT family protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23190.76 Da        Isoelectric Point: 9.7509

>NTDB_id=505947 I6L85_RS07810 WP_008808581.1 1565984..1566586(+) (recU) [Streptococcus gordonii strain FDAARGOS 1455]
MVNYPHKLTSKNNIKKVKKETVDFANRGMTFEKMINDTNDYYLSRGLAVIHKKPTPVQIVKVDYPKRSRAKIVEAYFRQA
STTDYSGVYRGHYIDFEAKETRQKQSMPMKNFHAHQIEHMDQVLNQGGICFVLLHFSSLKETYLLPAPYLIEFYKIDKGG
KSMPLDYIQKHGYLIEQNILPSVPYLDIISKNLLGGHSNE

Nucleotide


Download         Length: 603 bp        

>NTDB_id=505947 I6L85_RS07810 WP_008808581.1 1565984..1566586(+) (recU) [Streptococcus gordonii strain FDAARGOS 1455]
ATGGTCAACTATCCGCATAAGCTTACATCTAAAAATAACATAAAAAAAGTGAAAAAAGAGACTGTCGATTTCGCTAATCG
GGGAATGACTTTCGAAAAAATGATTAACGACACCAATGACTATTATCTTAGCCGTGGATTAGCTGTTATTCATAAAAAGC
CTACACCAGTGCAAATTGTCAAAGTTGATTATCCTAAGCGAAGCCGTGCCAAGATTGTCGAGGCCTACTTTCGCCAAGCA
TCTACTACGGACTACTCGGGAGTTTACCGTGGGCATTATATTGACTTTGAAGCCAAGGAAACGCGGCAAAAACAATCCAT
GCCTATGAAGAACTTTCATGCACACCAGATTGAGCATATGGATCAAGTGCTCAATCAAGGCGGAATTTGCTTTGTCTTAC
TTCACTTTTCTAGCCTGAAGGAAACCTACCTCCTTCCTGCTCCCTACTTAATTGAGTTTTACAAGATTGATAAGGGTGGG
AAATCCATGCCCCTGGATTATATTCAAAAACATGGTTATCTCATTGAACAAAACATCCTTCCCAGCGTACCTTATCTTGA
TATAATCTCAAAAAATTTACTAGGTGGTCACTCTAATGAATAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(27-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

49.254

100

0.495