Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   I6L85_RS07780 Genome accession   NZ_CP077248
Coordinates   1561316..1561798 (+) Length   160 a.a.
NCBI ID   WP_217002523.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS 1455     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1556316..1566798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L85_RS07765 (I6L85_07765) rpoZ 1558396..1558710 (-) 315 WP_008808589.1 DNA-directed RNA polymerase subunit omega -
  I6L85_RS07770 (I6L85_07770) gmk 1558735..1559361 (-) 627 WP_008808588.1 guanylate kinase -
  I6L85_RS07775 (I6L85_07775) - 1559475..1561082 (-) 1608 WP_008808587.1 ribonuclease Y -
  I6L85_RS07780 (I6L85_07780) luxS 1561316..1561798 (+) 483 WP_217002523.1 S-ribosylhomocysteine lyase Regulator
  I6L85_RS07785 (I6L85_07785) - 1561855..1563267 (-) 1413 WP_048778745.1 cell division site-positioning protein MapZ family protein -
  I6L85_RS07790 (I6L85_07790) - 1563273..1564430 (-) 1158 WP_111723388.1 class I SAM-dependent RNA methyltransferase -
  I6L85_RS07800 (I6L85_07800) gpsB 1564971..1565321 (-) 351 WP_012000085.1 cell division regulator GpsB -
  I6L85_RS07805 (I6L85_07805) - 1565391..1565918 (-) 528 WP_111723387.1 DUF1273 domain-containing protein -
  I6L85_RS07810 (I6L85_07810) recU 1565984..1566586 (+) 603 WP_008808581.1 Holliday junction resolvase RecU Machinery gene

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 18022.69 Da        Isoelectric Point: 5.2546

>NTDB_id=505946 I6L85_RS07780 WP_217002523.1 1561316..1561798(+) (luxS) [Streptococcus gordonii strain FDAARGOS 1455]
MSKEVIVESFELDHTIVKAPYVRLIGEESGPKGDVISNFDIRLVQPNEDSIPTAGLHTIEHLLAMLIRKRIDGMIDCSPF
GCRTGFHMIMWGRHTPSEIAQVIKSCLEEIVETTTWEDIPGTTIESCGNYKDHSLFSAKEWAKLILKQGISDNAFERHVI

Nucleotide


Download         Length: 483 bp        

>NTDB_id=505946 I6L85_RS07780 WP_217002523.1 1561316..1561798(+) (luxS) [Streptococcus gordonii strain FDAARGOS 1455]
ATGTCTAAAGAAGTTATTGTTGAAAGTTTCGAGCTTGATCACACAATCGTTAAGGCCCCTTATGTACGACTCATTGGAGA
AGAAAGCGGACCAAAAGGAGATGTCATTTCCAATTTTGATATCCGACTTGTCCAGCCAAATGAAGATTCCATTCCAACTG
CAGGTCTCCATACCATTGAACACCTGCTGGCCATGCTTATCCGTAAACGCATTGATGGAATGATTGATTGCTCTCCTTTT
GGTTGTCGAACTGGTTTCCATATGATCATGTGGGGGCGTCATACCCCATCTGAAATTGCTCAAGTGATCAAATCATGCCT
CGAAGAAATCGTCGAAACCACCACTTGGGAGGACATCCCAGGAACTACGATTGAGTCTTGCGGAAACTATAAAGATCACA
GCCTCTTTTCTGCCAAGGAGTGGGCTAAGTTAATCCTCAAACAAGGCATCTCGGATAATGCTTTCGAACGCCATGTCATT
TGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(7-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

39.474

95

0.375