Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   I6L85_RS06630 Genome accession   NZ_CP077248
Coordinates   1335840..1337669 (-) Length   609 a.a.
NCBI ID   WP_111723508.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS 1455     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1330840..1342669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L85_RS06590 (I6L85_06590) - 1331411..1331866 (-) 456 WP_111723509.1 DUF4274 domain-containing protein -
  I6L85_RS06595 (I6L85_06595) - 1331878..1332162 (-) 285 WP_197711949.1 AHH domain-containing protein -
  I6L85_RS06600 (I6L85_06600) - 1332299..1332469 (-) 171 WP_155719038.1 hypothetical protein -
  I6L85_RS06605 (I6L85_06605) - 1332470..1332646 (+) 177 WP_155719039.1 hypothetical protein -
  I6L85_RS06610 (I6L85_06610) - 1333009..1333194 (+) 186 WP_061600770.1 hypothetical protein -
  I6L85_RS06615 (I6L85_06615) lctO 1333269..1334405 (+) 1137 Protein_1275 L-lactate oxidase -
  I6L85_RS06620 (I6L85_06620) - 1334567..1335443 (+) 877 Protein_1276 IS30 family transposase -
  I6L85_RS06625 (I6L85_06625) - 1335418..1335720 (-) 303 WP_061600771.1 hypothetical protein -
  I6L85_RS06630 (I6L85_06630) uvrC 1335840..1337669 (-) 1830 WP_111723508.1 excinuclease ABC subunit UvrC Machinery gene
  I6L85_RS06635 (I6L85_06635) - 1337712..1338401 (-) 690 WP_048775120.1 YjjG family noncanonical pyrimidine nucleotidase -
  I6L85_RS06640 (I6L85_06640) - 1338746..1339672 (-) 927 WP_111723507.1 DNA repair protein RadC -
  I6L85_RS06645 (I6L85_06645) - 1339726..1340559 (-) 834 WP_111723506.1 AraC family transcriptional regulator -
  I6L85_RS06650 (I6L85_06650) - 1340756..1341250 (-) 495 WP_002904626.1 YkgJ family cysteine cluster protein -
  I6L85_RS06655 (I6L85_06655) pnuC 1341625..1342416 (-) 792 WP_111723505.1 nicotinamide riboside transporter PnuC -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 69738.35 Da        Isoelectric Point: 9.1138

>NTDB_id=505927 I6L85_RS06630 WP_111723508.1 1335840..1337669(-) (uvrC) [Streptococcus gordonii strain FDAARGOS 1455]
MNKLIQSKLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDTKTEALVSEIEDFEFIVTESNIEALLLEIN
LIKENKPKYNIMLKDDKSYPFIKITNETYPRLIITRQVKKDGGLYFGPYPDVGAANEIKRLLDRLFPFRKCTNPPEKVCF
YYHLGQCKAHTICQVDSQYFKELAQEVAAFLKGQDDQIIEDLRGKMAGAAQAMEFEKAAEYRDLIQSIGTLRTKQRVMAK
DLQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYIGQFYQEKSHLKPNEILIPADIDEEAVRAM
VDTKVLKPQRGEKKQLVNLAIKNARVSLQQKFDLLEKSIEKTQGAIENLGQLLNIPTPVRIESFDNSNIMGTSPVSAMVV
FVNGKPSKKDYRKYKIKTVVGPDDYASMREVIKRRYSRVIRDGLTPPDLIVIDGGQGQVNIAKEVIQEQLGLDIPIAGLQ
KNDKHQTHELLFGDPLQVVELSRNSQEFFLLQRIQDEVHRFAITFHRQLRSKNSFSSQLDGIEGLGPKRKQNLMKHFKSL
TKIKEASVDQIVEVGVPRAVAETVREKLNLADQQKAALPEVAEPIENMK

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=505927 I6L85_RS06630 WP_111723508.1 1335840..1337669(-) (uvrC) [Streptococcus gordonii strain FDAARGOS 1455]
ATGAACAAGCTAATCCAATCAAAGCTGGAACTGTTACCGACCAGTCCTGGCTGTTACATTCACAAAGACAAAAACGGTAC
CATTATCTATGTCGGCAAAGCCAAGAATCTGCGCAATCGGGTTCGTTCTTATTTCCGTGGAAGTCATGATACCAAGACGG
AGGCTCTGGTTTCTGAGATTGAGGATTTTGAGTTTATTGTTACTGAGTCCAACATTGAGGCTTTGCTTCTGGAGATTAAT
CTAATCAAGGAAAACAAGCCTAAGTACAATATCATGCTCAAGGACGATAAGTCCTATCCATTTATCAAGATTACCAATGA
AACCTATCCGCGCCTAATCATCACGCGCCAAGTCAAAAAGGATGGCGGACTTTATTTTGGTCCTTACCCCGATGTTGGTG
CGGCCAATGAAATCAAGCGGCTTTTAGATCGGCTCTTTCCTTTTCGCAAGTGTACCAATCCGCCTGAAAAGGTCTGCTTT
TACTACCATCTAGGGCAGTGCAAGGCCCACACTATTTGTCAGGTAGACAGCCAGTATTTCAAAGAGCTAGCCCAGGAGGT
AGCAGCATTTCTCAAGGGGCAGGATGACCAGATTATTGAGGATTTACGGGGGAAAATGGCTGGCGCAGCGCAAGCTATGG
AGTTTGAAAAGGCAGCGGAGTACCGCGACTTGATTCAGTCCATTGGCACGCTGCGAACCAAGCAGCGGGTTATGGCCAAG
GATTTGCAGAATCGTGATGTCTTTGGCTACTATGTGGATAAGGGCTGGATGTGCGTACAGGTCTTCTTTGTCCGCCAAGG
AAAGCTAATTGAGCGCGATGTCAACCTTTTTCCCTATTACAATGATCCGGACGAGGATTTCTTGACCTATATCGGCCAGT
TCTACCAAGAAAAATCTCACCTCAAGCCCAATGAAATTTTGATTCCAGCAGATATTGACGAAGAAGCTGTCCGAGCCATG
GTGGATACCAAGGTGCTTAAGCCTCAGCGAGGCGAGAAGAAACAGCTGGTCAATCTGGCTATCAAGAATGCTAGAGTCAG
TCTCCAACAGAAATTTGACCTCTTGGAGAAATCTATTGAAAAGACCCAAGGAGCTATTGAGAATCTAGGGCAGCTTCTTA
ACATTCCGACACCTGTTCGGATTGAGTCTTTTGATAATTCCAACATCATGGGGACCAGTCCTGTATCGGCTATGGTGGTT
TTTGTCAATGGTAAACCAAGCAAGAAGGACTATCGCAAGTATAAGATCAAGACTGTGGTGGGACCTGATGACTACGCCAG
TATGCGAGAGGTCATCAAGCGACGCTACAGTAGGGTGATTCGGGATGGACTGACTCCGCCTGATCTGATTGTCATTGACG
GTGGACAAGGTCAAGTGAATATCGCTAAAGAAGTTATTCAGGAGCAGTTGGGATTGGATATTCCTATCGCTGGACTGCAA
AAAAATGACAAGCACCAGACTCATGAATTGCTTTTTGGAGACCCTTTGCAGGTTGTAGAATTATCCCGCAATTCGCAGGA
ATTTTTCCTACTCCAGCGTATCCAAGATGAAGTCCACCGCTTCGCTATTACCTTCCACCGCCAACTCCGGTCCAAGAATT
CCTTCTCATCGCAACTAGATGGTATCGAAGGATTGGGACCTAAGCGCAAGCAAAACCTTATGAAGCATTTCAAATCTCTA
ACCAAGATTAAAGAAGCCAGTGTCGACCAAATCGTCGAAGTCGGCGTACCACGAGCAGTAGCAGAAACAGTGCGGGAAAA
GCTAAATCTAGCAGACCAGCAGAAAGCAGCACTACCTGAAGTAGCAGAGCCGATTGAAAATATGAAATGA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(197-228)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(372-523)

GIY-YIG catalytic domain (GIY-YIG)

(17-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

90.05

99.015

0.892
  uvrC Streptococcus pneumoniae R6

89.552

99.015

0.887
  uvrC Streptococcus pneumoniae D39

89.552

99.015

0.887