Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   ICC24_RS01945 Genome accession   NZ_CP065029
Coordinates   363581..363979 (-) Length   132 a.a.
NCBI ID   WP_017473998.1    Uniprot ID   A0AB37GU74
Organism   Bacillus licheniformis strain LCDD6     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 358581..368979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICC24_RS01920 (ICC24_01920) - 358909..359592 (-) 684 WP_003178799.1 amino acid ABC transporter permease -
  ICC24_RS01925 (ICC24_01925) - 359604..360479 (-) 876 WP_003178801.1 transporter substrate-binding domain-containing protein -
  ICC24_RS01930 (ICC24_01930) - 360663..361214 (+) 552 WP_003178803.1 NAD(P)H-dependent oxidoreductase -
  ICC24_RS01935 (ICC24_01935) - 361311..362036 (+) 726 WP_003178804.1 AAA family ATPase -
  ICC24_RS01940 (ICC24_01940) - 362106..363542 (+) 1437 WP_017473999.1 glycoside hydrolase family 1 protein -
  ICC24_RS01945 (ICC24_01945) nin/comJ 363581..363979 (-) 399 WP_017473998.1 competence protein ComJ Regulator
  ICC24_RS01950 (ICC24_01950) nucA/comI 363997..364443 (-) 447 WP_009330244.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  ICC24_RS01955 (ICC24_01955) - 364709..364912 (+) 204 WP_003178812.1 hypothetical protein -
  ICC24_RS01960 (ICC24_01960) - 364918..365721 (+) 804 WP_017473997.1 serine/threonine protein kinase -
  ICC24_RS01965 (ICC24_01965) - 365741..367350 (-) 1610 Protein_355 methyl-accepting chemotaxis protein -
  ICC24_RS01970 (ICC24_01970) - 367541..368281 (-) 741 WP_003178817.1 ribonuclease YeeF family protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 15034.13 Da        Isoelectric Point: 5.6435

>NTDB_id=505854 ICC24_RS01945 WP_017473998.1 363581..363979(-) (nin/comJ) [Bacillus licheniformis strain LCDD6]
MIKKWEAQEMTMSYHQFTVYQKGGKPPVMDWTDEDIKRGYTTGEHAVSFEALENTASSVEVRLNVQKQVLSFNRRVTVPF
EVLYDGVEIASVLSKKLTCDIPQGAYQLTCYTIMPDHSGTAQITYLLDFKQA

Nucleotide


Download         Length: 399 bp        

>NTDB_id=505854 ICC24_RS01945 WP_017473998.1 363581..363979(-) (nin/comJ) [Bacillus licheniformis strain LCDD6]
TTGATCAAAAAGTGGGAAGCACAAGAAATGACGATGTCATACCATCAGTTTACCGTTTATCAGAAAGGCGGAAAGCCGCC
CGTTATGGATTGGACAGACGAGGATATTAAAAGAGGATATACAACGGGAGAGCACGCGGTCTCGTTTGAAGCTCTCGAAA
ACACGGCATCTTCAGTAGAAGTCCGTTTGAATGTCCAAAAACAGGTGCTCTCCTTCAACAGGCGCGTCACCGTTCCTTTC
GAAGTGCTTTATGACGGGGTCGAAATTGCAAGCGTTCTATCCAAGAAATTGACATGCGATATCCCGCAAGGCGCCTATCA
GCTGACATGCTATACAATAATGCCTGATCACAGCGGCACTGCACAGATCACCTATCTTCTCGATTTTAAACAGGCTTGA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

50

96.97

0.485