Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   I6L84_RS08100 Genome accession   NZ_CP077224
Coordinates   1644876..1645478 (+) Length   200 a.a.
NCBI ID   WP_045505953.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS 1454     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1639876..1650478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L84_RS08070 (I6L84_08070) luxS 1640203..1640685 (+) 483 WP_008808586.1 S-ribosylhomocysteine lyase Regulator
  I6L84_RS08075 (I6L84_08075) - 1640747..1642159 (-) 1413 WP_060552938.1 cell division site-positioning protein MapZ family protein -
  I6L84_RS08080 (I6L84_08080) - 1642156..1643322 (-) 1167 WP_060552939.1 class I SAM-dependent RNA methyltransferase -
  I6L84_RS08090 (I6L84_08090) gpsB 1643863..1644213 (-) 351 WP_008808583.1 cell division regulator GpsB -
  I6L84_RS08095 (I6L84_08095) - 1644283..1644810 (-) 528 WP_060552940.1 DUF1273 domain-containing protein -
  I6L84_RS08100 (I6L84_08100) recU 1644876..1645478 (+) 603 WP_045505953.1 Holliday junction resolvase RecU Machinery gene
  I6L84_RS08105 (I6L84_08105) pbp1a 1645471..1647609 (+) 2139 WP_060552941.1 penicillin-binding protein PBP1A -
  I6L84_RS08110 (I6L84_08110) pepC 1647721..1649055 (-) 1335 WP_060552942.1 aminopeptidase C -
  I6L84_RS08115 (I6L84_08115) - 1649134..1649694 (-) 561 WP_060552943.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23204.79 Da        Isoelectric Point: 9.7509

>NTDB_id=505841 I6L84_RS08100 WP_045505953.1 1644876..1645478(+) (recU) [Streptococcus gordonii strain FDAARGOS 1454]
MVNYPHKLTSKNNIKKVKKETVDFANRGMTFEKMINDTNDYYLSRGLAVIHKKPTPVQIVKVDYPKRSRAKIVEAYFRQA
STTDYSGVYRGHYIDFEAKETRQKQSMPMKNFHAHQIEHMDQVLNQGGICFVLLHFSSLKETYLLPAPYLIEFYKIDKGG
KSMPLDYIQKHGYLIEQNILPSIPYLDIISKNLLGGHSNE

Nucleotide


Download         Length: 603 bp        

>NTDB_id=505841 I6L84_RS08100 WP_045505953.1 1644876..1645478(+) (recU) [Streptococcus gordonii strain FDAARGOS 1454]
ATGGTCAACTATCCGCATAAGCTTACATCTAAAAATAACATAAAAAAAGTGAAAAAAGAGACTGTCGATTTCGCTAATCG
GGGAATGACTTTTGAAAAAATGATTAACGACACCAATGACTATTACCTTAGCCGTGGATTAGCTGTTATTCATAAAAAGC
CTACACCCGTGCAAATTGTCAAAGTTGATTATCCTAAGCGAAGCCGTGCCAAGATTGTCGAGGCCTACTTTCGCCAAGCA
TCTACTACGGACTACTCGGGAGTTTACCGTGGGCATTACATTGATTTTGAAGCCAAGGAAACGCGGCAAAAGCAATCTAT
GCCTATGAAAAATTTTCATGCACACCAGATTGAACATATGGATCAAGTGCTCAATCAAGGCGGGATTTGCTTTGTCTTAC
TTCACTTTTCTAGTCTGAAGGAAACCTACCTCCTTCCTGCTCCCTACTTAATTGAGTTTTACAAGATTGATAAGGGTGGG
AAATCCATGCCCCTGGATTATATTCAGAAACATGGTTATCTCATTGAACAAAACATCCTTCCCAGCATACCTTATCTTGA
TATTATCTCAAAAAATTTACTAGGTGGTCACTCTAATGAATAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(27-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

49.751

100

0.5