Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   I6L84_RS08070 Genome accession   NZ_CP077224
Coordinates   1640203..1640685 (+) Length   160 a.a.
NCBI ID   WP_008808586.1    Uniprot ID   Q8KQK6
Organism   Streptococcus gordonii strain FDAARGOS 1454     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1635203..1645685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L84_RS08055 (I6L84_08055) rpoZ 1637285..1637599 (-) 315 WP_008808589.1 DNA-directed RNA polymerase subunit omega -
  I6L84_RS08060 (I6L84_08060) gmk 1637624..1638250 (-) 627 WP_008808588.1 guanylate kinase -
  I6L84_RS08065 (I6L84_08065) - 1638365..1639972 (-) 1608 WP_045772969.1 ribonuclease Y -
  I6L84_RS08070 (I6L84_08070) luxS 1640203..1640685 (+) 483 WP_008808586.1 S-ribosylhomocysteine lyase Regulator
  I6L84_RS08075 (I6L84_08075) - 1640747..1642159 (-) 1413 WP_060552938.1 cell division site-positioning protein MapZ family protein -
  I6L84_RS08080 (I6L84_08080) - 1642156..1643322 (-) 1167 WP_060552939.1 class I SAM-dependent RNA methyltransferase -
  I6L84_RS08090 (I6L84_08090) gpsB 1643863..1644213 (-) 351 WP_008808583.1 cell division regulator GpsB -
  I6L84_RS08095 (I6L84_08095) - 1644283..1644810 (-) 528 WP_060552940.1 DUF1273 domain-containing protein -
  I6L84_RS08100 (I6L84_08100) recU 1644876..1645478 (+) 603 WP_045505953.1 Holliday junction resolvase RecU Machinery gene

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17980.61 Da        Isoelectric Point: 5.2546

>NTDB_id=505840 I6L84_RS08070 WP_008808586.1 1640203..1640685(+) (luxS) [Streptococcus gordonii strain FDAARGOS 1454]
MSKEVIVESFELDHTIVKAPYVRLIGEESGPKGDVISNFDIRLVQPNEDSIPTAGLHTIEHLLAMLIRKRIDGMIDCSPF
GCRTGFHMIMWGRHTPSEIAQVIKSCLEEIAETTTWEDVPGTTIESCGNYKDHSLFSAKEWAKLILKQGISDNAFERHVI

Nucleotide


Download         Length: 483 bp        

>NTDB_id=505840 I6L84_RS08070 WP_008808586.1 1640203..1640685(+) (luxS) [Streptococcus gordonii strain FDAARGOS 1454]
ATGTCTAAAGAAGTTATTGTTGAAAGTTTCGAGCTTGATCACACAATCGTTAAGGCCCCTTATGTACGACTCATTGGAGA
AGAAAGCGGACCAAAAGGAGATGTCATTTCCAATTTTGATATCCGACTTGTCCAGCCCAATGAAGATTCCATTCCAACTG
CAGGTCTCCATACCATTGAACACCTGCTGGCCATGCTTATCCGTAAACGCATTGATGGAATGATTGATTGCTCTCCTTTT
GGTTGTCGAACTGGTTTCCATATGATCATGTGGGGGCGTCATACCCCATCCGAAATCGCCCAAGTGATCAAATCATGCCT
TGAAGAAATCGCTGAAACCACTACTTGGGAGGACGTCCCTGGAACTACGATTGAGTCTTGCGGAAACTATAAAGATCACA
GCCTCTTTTCTGCCAAGGAGTGGGCTAAATTAATCCTCAAACAAGGGATCTCAGATAATGCTTTCGAACGCCATGTTATT
TGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(7-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8KQK6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

38.816

95

0.369