Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   MY9_RS01975 Genome accession   NC_017743
Coordinates   367996..368445 (-) Length   149 a.a.
NCBI ID   WP_014662736.1    Uniprot ID   -
Organism   Bacillus sp. JS     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 362996..373445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MY9_RS21480 - 363320..363515 (+) 196 Protein_336 hypothetical protein -
  MY9_RS01940 (MY9_0351) - 363535..363990 (+) 456 WP_014662729.1 RDD family protein -
  MY9_RS01945 (MY9_0352) - 364071..364403 (+) 333 WP_014662730.1 YckD family protein -
  MY9_RS01950 (MY9_0353) - 364530..364952 (+) 423 WP_041521243.1 MarR family transcriptional regulator -
  MY9_RS01955 (MY9_0354) - 364940..365281 (+) 342 WP_014662732.1 DUF3147 family protein -
  MY9_RS01960 (MY9_0355) - 365300..366028 (+) 729 WP_014662733.1 AAA family ATPase -
  MY9_RS01965 (MY9_0356) bglC 366101..367534 (+) 1434 WP_014662734.1 6-phospho-beta-glucosidase -
  MY9_RS01970 (MY9_0357) nin/comJ 367571..367969 (-) 399 WP_014662735.1 DNA-entry nuclease inhibitor Regulator
  MY9_RS01975 (MY9_0358) nucA/comI 367996..368445 (-) 450 WP_014662736.1 DNA-entry nuclease Machinery gene
  MY9_RS01980 (MY9_0359) tlpC 368613..370334 (-) 1722 WP_014662737.1 methyl-accepting chemotaxis protein TlpC -
  MY9_RS01985 (MY9_0360) hxlB 370445..371002 (-) 558 WP_014662738.1 6-phospho-3-hexuloisomerase -
  MY9_RS01990 (MY9_0361) hxlA 371008..371640 (-) 633 WP_014662739.1 3-hexulose-6-phosphate synthase -
  MY9_RS01995 (MY9_0362) hxlR 371873..372235 (+) 363 WP_014662740.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16399.30 Da        Isoelectric Point: 4.4321

>NTDB_id=50578 MY9_RS01975 WP_014662736.1 367996..368445(-) (nucA/comI) [Bacillus sp. JS]
MNITTDIIKTILLVIVIIAAAAVGLIKGDFFSADQKTSQTKEYDETIAFPSDRYPETAKHIKDAINEGHSDVCTIDRDGA
EERREQSLKDVPSKTGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=50578 MY9_RS01975 WP_014662736.1 367996..368445(-) (nucA/comI) [Bacillus sp. JS]
GTGAACATCACGACGGACATCATAAAAACGATACTTCTCGTCATCGTCATCATAGCAGCTGCAGCTGTCGGCCTGATAAA
AGGAGACTTTTTCTCAGCTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATCGCCTTCCCTTCTGACCGTT
ATCCCGAAACGGCCAAGCATATTAAGGATGCGATAAATGAGGGGCACTCAGATGTGTGCACCATCGACAGAGACGGAGCT
GAGGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAACGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAATCGCGGAGCAGGCTCTTGGGTCGGGCATC
AGCTTACCGATTATCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(53-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

97.315

100

0.973

Multiple sequence alignment