Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   DKB71_RS25805 Genome accession   NZ_CP064949
Coordinates   5681849..5684083 (-) Length   744 a.a.
NCBI ID   WP_408598271.1    Uniprot ID   -
Organism   Pseudomonas sp. PLMAX     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 5685001..5686428 5681849..5684083 flank 918


Gene organization within MGE regions


Location: 5681849..5686428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKB71_RS25805 (DKB71_25495) comA 5681849..5684083 (-) 2235 WP_408598271.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DKB71_RS25810 (DKB71_25500) - 5684220..5684735 (+) 516 WP_274072945.1 DUF2062 domain-containing protein -
  DKB71_RS25815 (DKB71_25505) - 5685001..5686428 (+) 1428 WP_408596762.1 IS1182 family transposase -

Sequence

Protein


Download         Length: 744 a.a.        Molecular weight: 81639.88 Da        Isoelectric Point: 10.6754

>NTDB_id=505762 DKB71_RS25805 WP_408598271.1 5681849..5684083(-) (comA) [Pseudomonas sp. PLMAX]
MRTGMMALALGLLALRFLPVLPPVWLWLLMPVAGLILLPFRTYPAAFFLFGLSWACAHAQWALDDRLAPTLDGETRWLEG
RVTGLPQNAEGVVRFELTDSRSRRSDLPRHLRLAWYDGPPVNSGEQWRLAVKLKRPGGLLNPHAFDYEAWLLAQRIGATG
TVKAGERLAPARWALRDGVRQRLQAVDAQGRTGVLTALVLGDGAGLSREDWQVLQDTGTVHLLVISGQHVGLLAGMVYLL
IAGLARFGLWPGRLPWLPWACGLAFAAALGYGLLAGFEVPVRRACLMIGLVLLWRLRFRHLGAWWPLLLALNGVLLMDPL
ASLQPGFWLSFAAVAVLIFTFGGRLGPWPWWQTWTRAQWLIAIGLGPFLLVLGLPISLSGPLVNLLAVPWISLVVLPPAL
LGTLLLPVPHVGEWLLWLAGGLIDWLFTALALVAGKVPAWLPAAIPLWVWGLGTLGAFLLLLPRGVPLRPLGWPLLLLLV
FPPRPLLPEGIAEVWQLDVGQGLAIMVRTRHHTLLYDAGPRFRDLDQGARVVLPALRKLGVKEIDLMLISHAHADHAGGA
RAVANGLPVKRVVSGEPADLPAGLQAEGCESGRQWTWDGVEFRLWHWPQARDSNQNSCVLQITANGERLLLSGDIDSSAE
RALLDSPLAVPTDWLQAPHHGSRSSSSMALLNVLQPKAVLISRGQGNSFGHPHAVVIARYRNRGTAIYDSAQQGAVHLQL
GRFEPPRAMRQERRFWRDPPPPGK

Nucleotide


Download         Length: 2235 bp        

>NTDB_id=505762 DKB71_RS25805 WP_408598271.1 5681849..5684083(-) (comA) [Pseudomonas sp. PLMAX]
ATGCGCACAGGGATGATGGCGCTGGCGTTGGGTCTGTTGGCCTTGCGTTTTTTACCGGTGTTACCGCCGGTCTGGTTGTG
GTTGTTGATGCCGGTGGCAGGTTTGATTTTGCTGCCGTTCAGGACGTATCCGGCGGCGTTTTTCCTGTTCGGCCTGAGTT
GGGCTTGCGCCCATGCGCAATGGGCCCTGGACGATCGGCTGGCGCCGACCCTCGACGGGGAAACGCGCTGGCTTGAAGGG
CGGGTGACCGGGTTGCCGCAGAACGCCGAAGGGGTGGTGCGTTTCGAACTGACCGACAGCCGGTCACGCCGCAGCGACCT
GCCGCGACATTTGCGCCTGGCCTGGTACGACGGCCCGCCGGTCAACAGCGGCGAACAGTGGCGGCTGGCGGTCAAGCTGA
AGCGACCTGGGGGTTTGCTCAATCCCCATGCGTTCGACTATGAGGCCTGGCTACTGGCGCAACGCATCGGTGCGACCGGG
ACCGTCAAGGCCGGGGAGCGACTGGCGCCAGCCCGGTGGGCCTTGCGCGACGGTGTCCGGCAGCGGCTGCAGGCTGTGGA
CGCCCAGGGGCGAACGGGCGTGCTGACAGCGTTGGTGCTGGGCGACGGCGCGGGGCTCAGTCGCGAGGATTGGCAGGTGT
TGCAAGACACCGGCACTGTGCATCTGCTGGTGATTTCCGGGCAACACGTCGGCTTGTTGGCTGGGATGGTTTATCTGTTG
ATCGCCGGGCTTGCCCGTTTTGGCTTGTGGCCAGGCCGTCTGCCTTGGTTGCCCTGGGCCTGCGGCCTGGCTTTTGCAGC
CGCCCTGGGATATGGGCTGTTGGCTGGTTTCGAGGTGCCGGTTCGCCGAGCCTGCCTGATGATTGGCCTGGTACTGCTGT
GGCGCCTTCGCTTTCGTCACCTGGGTGCGTGGTGGCCGCTGTTGCTGGCACTCAATGGCGTCTTGCTGATGGACCCGTTG
GCGAGTCTGCAGCCGGGATTCTGGCTGTCCTTCGCGGCCGTGGCGGTGTTGATCTTCACCTTCGGTGGTCGCTTGGGCCC
TTGGCCATGGTGGCAAACCTGGACCCGTGCCCAGTGGCTGATCGCAATCGGCCTTGGCCCGTTCTTGCTGGTCCTGGGAT
TGCCGATCAGCCTCAGCGGCCCACTGGTCAATTTGCTGGCGGTGCCCTGGATCAGCCTGGTGGTGCTGCCTCCGGCATTG
CTCGGGACTTTGTTATTGCCGGTGCCCCACGTCGGCGAGTGGTTACTGTGGCTGGCGGGCGGTTTGATCGATTGGCTGTT
CACCGCGCTGGCACTGGTCGCCGGCAAGGTGCCCGCGTGGCTGCCCGCGGCCATCCCGTTGTGGGTCTGGGGCCTCGGCA
CTCTGGGTGCCTTTCTGTTGTTGCTGCCGCGAGGCGTGCCCCTGCGTCCGCTAGGATGGCCTTTGCTGCTGCTTCTGGTT
TTTCCTCCGCGGCCGCTGCTACCCGAAGGCATTGCCGAGGTTTGGCAACTGGATGTGGGCCAAGGGTTGGCGATCATGGT
GCGTACTCGCCATCACACGCTGCTGTATGACGCTGGCCCGCGTTTTCGAGATCTCGACCAGGGCGCGCGGGTGGTACTGC
CAGCGTTACGCAAACTGGGGGTGAAGGAGATTGACCTGATGTTGATCAGCCATGCCCATGCCGATCACGCCGGTGGCGCC
CGGGCCGTTGCCAATGGGTTGCCGGTGAAACGGGTGGTCAGTGGCGAACCTGCCGACCTGCCTGCCGGGTTGCAGGCCGA
GGGCTGTGAGAGCGGCCGGCAATGGACGTGGGACGGGGTCGAGTTCCGGCTTTGGCATTGGCCACAGGCCAGGGACAGCA
ATCAGAATTCCTGCGTCTTGCAGATAACAGCCAATGGCGAGCGCTTGCTGCTCAGCGGTGACATCGACAGCAGCGCCGAG
CGCGCGTTGCTCGACAGCCCATTGGCCGTGCCCACCGACTGGTTGCAGGCCCCGCACCACGGCAGCCGCAGTTCGTCGTC
GATGGCGCTGCTCAATGTCTTGCAGCCCAAGGCGGTGCTGATCTCCCGTGGCCAGGGCAACTCGTTCGGTCATCCGCATG
CGGTGGTGATTGCCCGCTATCGAAATCGCGGCACGGCGATCTACGACAGCGCGCAGCAAGGCGCCGTTCATCTGCAACTG
GGGCGTTTCGAGCCGCCACGCGCGATGCGTCAAGAACGGCGCTTCTGGCGCGATCCACCACCCCCGGGCAAATAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-681)

Domain of unknown function (DUF4131) (DUF4131)

(23-167)

Competence protein (Competence)

(198-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

63.547

96.237

0.612
  comA Ralstonia pseudosolanacearum GMI1000

33.571

100

0.38