Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   DKB71_RS25800 Genome accession   NZ_CP064949
Coordinates   5681115..5681750 (-) Length   211 a.a.
NCBI ID   WP_008066570.1    Uniprot ID   J3D0U5
Organism   Pseudomonas sp. PLMAX     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5676115..5686750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKB71_RS25765 (DKB71_25455) - 5676517..5676987 (-) 471 WP_323608675.1 (2Fe-2S)-binding protein -
  DKB71_RS25770 (DKB71_25460) murB 5677228..5678247 (-) 1020 WP_408598267.1 UDP-N-acetylmuramate dehydrogenase -
  DKB71_RS25775 (DKB71_25465) - 5678244..5678708 (-) 465 WP_408598269.1 low molecular weight protein-tyrosine-phosphatase -
  DKB71_RS25780 (DKB71_25470) kdsB 5678708..5679472 (-) 765 WP_323608674.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  DKB71_RS25785 (DKB71_25475) - 5679469..5679654 (-) 186 WP_003179363.1 Trm112 family protein -
  DKB71_RS25790 (DKB71_25480) lpxK 5679680..5680690 (-) 1011 WP_274072947.1 tetraacyldisaccharide 4'-kinase -
  DKB71_RS25795 (DKB71_25485) - 5680690..5681118 (-) 429 WP_046817688.1 biopolymer transporter ExbD -
  DKB71_RS25800 (DKB71_25490) exbB 5681115..5681750 (-) 636 WP_008066570.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  DKB71_RS25805 (DKB71_25495) comA 5681849..5684083 (-) 2235 WP_408598271.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DKB71_RS25810 (DKB71_25500) - 5684220..5684735 (+) 516 WP_274072945.1 DUF2062 domain-containing protein -
  DKB71_RS25815 (DKB71_25505) - 5685001..5686428 (+) 1428 WP_408596762.1 IS1182 family transposase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22955.20 Da        Isoelectric Point: 7.3617

>NTDB_id=505761 DKB71_RS25800 WP_008066570.1 5681115..5681750(-) (exbB) [Pseudomonas sp. PLMAX]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFMGTGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAGVKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=505761 DKB71_RS25800 WP_008066570.1 5681115..5681750(-) (exbB) [Pseudomonas sp. PLMAX]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGCTGCCGATCATCCTGAGTTCCATCGCGGCAATGGCGATCGTTGC
CGAACGTCTGTGGACCCTGCGAGCCAGTCGCGTGACCCCGGAGCATTTGCTCGGGCAGGTCTGGGTCTGGATCAAGGACA
AGCAACTGAACAAGGAAAAGCTCAAGGAGCTGCGCGCCAATTCGCCCCTGGGTGAAATCCTGGCCGCGGGCCTGGCCAAC
TCCCGGCATGGTCGCGAGATCATGAAGGAATGCATCGAAGAGGCTGCCGCGCGGGTCATCCACGAGCTGGAACGCTACAT
CAATGCCCTCGGCACCATCGCCGCGATGGCCCCGTTGCTGGGGCTTTTGGGTACGGTGCTGGGCATGATCGACATTTTCA
GTGCGTTCATGGGCACGGGCATGACCACCAACGCCGCAGTGCTCGCCGGGGGTATCTCCAAGGCGCTGATCACCACGGCT
GCCGGTTTGATGGTCGGTATCCCTTCGGTATTCTTCCACCGTTTCCTGCAACGCCGGATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAGCTGGTCGAAGTGGTGCAGGGTGATCGTGACGTGGATCTGGCGGGGGTCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J3D0U5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

83.886

100

0.839