Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   I6L84_RS00170 Genome accession   NZ_CP077224
Coordinates   36362..37447 (+) Length   361 a.a.
NCBI ID   WP_060553293.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS 1454     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 31362..42447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L84_RS00145 (I6L84_00145) pgsA 31646..32185 (-) 540 WP_060553288.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  I6L84_RS00150 (I6L84_00150) rodZ 32194..33024 (-) 831 WP_060553289.1 cytoskeleton protein RodZ -
  I6L84_RS00155 (I6L84_00155) - 33271..34566 (-) 1296 WP_060553290.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  I6L84_RS00160 (I6L84_00160) - 34566..35813 (-) 1248 WP_060553291.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  I6L84_RS00165 (I6L84_00165) yaaA 35968..36360 (+) 393 WP_060553292.1 S4 domain-containing protein YaaA -
  I6L84_RS00170 (I6L84_00170) recF 36362..37447 (+) 1086 WP_060553293.1 DNA replication/repair protein RecF Machinery gene
  I6L84_RS00175 (I6L84_00175) guaB 37552..39033 (-) 1482 WP_008808044.1 IMP dehydrogenase -
  I6L84_RS00180 (I6L84_00180) trpS 39138..40160 (-) 1023 WP_060553294.1 tryptophan--tRNA ligase -
  I6L84_RS00185 (I6L84_00185) - 40390..42012 (+) 1623 WP_060553295.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 361 a.a.        Molecular weight: 41874.19 Da        Isoelectric Point: 9.2776

>NTDB_id=505742 I6L84_RS00170 WP_060553293.1 36362..37447(+) (recF) [Streptococcus gordonii strain FDAARGOS 1454]
MWLKSLTLKHFRNYQDAEINFHSGLNVFLGQNAQGKTNILESIYFLALTRSHRTRSDKDFIHFQEKDLKVSGILEKKTGT
IPLDIELTAKGRITKINHLKQNRLSDYIGTMNVVLFAPEDLQLIKGSPTLRRKFIDIELGQIKPLYLADLSNYNHVLKQR
NSYLKNSQKIDENFLSVLDEQLIEYGCRVVKHRLDFLKKLEIFAQEKHLDISQKKETLTIDYLSSVPLQDIDSIEESFRQ
SLSKNRKRDLFKQNTSVGPHRDDIAFFINQMDANYGSQGQHRSVVLSLKLAEIKLIENITKESPILLLDDVMSELDNNRQ
LKLLETISQEIQTFITTTTLEHLKNLPKDIKIFEILNGHIK

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=505742 I6L84_RS00170 WP_060553293.1 36362..37447(+) (recF) [Streptococcus gordonii strain FDAARGOS 1454]
ATGTGGCTAAAATCACTCACTCTTAAACATTTTCGTAATTATCAAGATGCAGAAATCAACTTTCACTCTGGTCTAAACGT
TTTTCTTGGCCAAAATGCACAAGGAAAAACAAATATTCTAGAATCTATTTACTTCTTAGCTTTGACTCGTAGTCACCGAA
CTAGATCAGATAAAGATTTTATTCATTTTCAAGAAAAAGATCTCAAAGTATCAGGTATCCTTGAAAAAAAGACAGGAACA
ATTCCTCTTGACATCGAGTTGACAGCTAAGGGACGTATTACTAAAATCAATCATCTCAAGCAAAATAGACTTTCCGACTA
TATTGGGACAATGAATGTTGTTCTGTTTGCGCCAGAAGATTTACAACTTATTAAAGGTTCGCCTACATTAAGACGAAAAT
TTATAGACATTGAATTGGGGCAAATCAAGCCTCTTTATCTAGCAGATCTTTCTAATTACAATCATGTTCTTAAACAAAGA
AATTCTTATCTAAAGAACAGTCAAAAAATTGATGAGAATTTTCTATCTGTTTTAGATGAACAGCTTATTGAATATGGTTG
TCGTGTGGTCAAACATCGCTTAGACTTCTTAAAAAAACTCGAAATATTCGCCCAGGAAAAACACCTTGATATCTCACAAA
AAAAAGAAACTCTAACTATTGACTATCTATCCTCTGTACCTTTACAAGATATTGACAGTATTGAAGAAAGTTTTAGACAA
AGCCTAAGTAAAAATCGAAAAAGAGATTTATTTAAACAAAATACTAGTGTAGGTCCTCATCGAGATGATATAGCTTTCTT
TATCAATCAAATGGATGCTAATTATGGAAGTCAGGGGCAACACAGAAGTGTGGTACTCTCTCTTAAATTAGCAGAAATAA
AATTGATTGAAAATATAACAAAAGAATCTCCTATCCTCCTGCTTGACGATGTGATGAGTGAACTTGACAATAATCGTCAA
CTTAAATTGCTAGAAACAATTTCTCAAGAAATACAAACTTTTATTACCACAACTACTTTGGAACACCTAAAAAACCTACC
TAAAGATATAAAAATATTTGAAATTTTAAATGGGCACATAAAATAG

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-355)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

70.67

99.169

0.701
  recF Bacillus subtilis subsp. subtilis str. 168

44.959

100

0.457