Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   IYR97_RS07000 Genome accession   NZ_CP064943
Coordinates   1554476..1556692 (+) Length   738 a.a.
NCBI ID   WP_088523030.1    Uniprot ID   -
Organism   Pseudomonas fulva strain ZDHY316     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1549476..1561692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IYR97_RS06980 (IYR97_06980) - 1551340..1551963 (+) 624 WP_027914345.1 glutathione S-transferase -
  IYR97_RS06985 (IYR97_06985) - 1552109..1553041 (+) 933 WP_027914346.1 ABC transporter ATP-binding protein -
  IYR97_RS06990 (IYR97_06990) - 1553038..1553817 (+) 780 WP_023533108.1 ABC transporter permease -
  IYR97_RS06995 (IYR97_06995) - 1553701..1554333 (-) 633 WP_115933573.1 DUF2062 domain-containing protein -
  IYR97_RS07000 (IYR97_07000) comA 1554476..1556692 (+) 2217 WP_088523030.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  IYR97_RS07005 (IYR97_07005) exbB 1556754..1557389 (+) 636 WP_023533075.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  IYR97_RS07010 (IYR97_07010) - 1557386..1557820 (+) 435 WP_028687688.1 ExbD/TolR family protein -
  IYR97_RS07015 (IYR97_07015) lpxK 1557820..1558821 (+) 1002 WP_181074058.1 tetraacyldisaccharide 4'-kinase -
  IYR97_RS07020 (IYR97_07020) - 1558864..1559049 (+) 186 WP_003247142.1 Trm112 family protein -
  IYR97_RS07025 (IYR97_07025) kdsB 1559046..1559807 (+) 762 WP_023533083.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  IYR97_RS07030 (IYR97_07030) - 1559807..1560271 (+) 465 WP_196110518.1 low molecular weight protein-tyrosine-phosphatase -
  IYR97_RS07035 (IYR97_07035) murB 1560268..1561287 (+) 1020 WP_196110519.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 79486.18 Da        Isoelectric Point: 10.7480

>NTDB_id=505707 IYR97_RS07000 WP_088523030.1 1554476..1556692(+) (comA) [Pseudomonas fulva strain ZDHY316]
MRTGMLALALGLLSLGLVPQLPSVGWLLLLAAGAVVSLFTRGWLLGVFLLGFCWACWSAKQAMDDRLAPGLEGRTLWLEG
RVVGLPARTAQGVRFDLEGAHSRRAELPQRLQLSWFDGPPLRAGEQWRLAVTLQRPGGLLNPHGPDREAQLLARRVGASG
TVKAGQLLTPAPAGWRDALRERLLAVEANGRQAALVALVLGDGAGLAREDWQALQATGTVHLLVISGQHIGLVAGLLYAV
VAWLARWGLWPARVPWLPWACALAMSAALAYGWLAGAGVPVQRACLMLAVVLLWRLRFRHLGAFHPLLLALVAVLLFEPL
AALLPGFWLSFGAVATLIYTFSARLGAWQPWQAWTRAQWVIAVGLLPVLLAVGLPVSLSAPLANLVAVPWVSLAVLPLAL
LGTLLLPLGSAGEALLWLAGGLLDILFRALALVAQQRPAWVPPALPLWAWLLVCLGALLLLLPRGVPLRGLGAVMLVALW
APREPVPDGQVEVWQLDVGQGLAVLLRTRQHSLLYDAGPARGESDLGERVVLPTLRKLGVDSLDLLVVSHAHADHAGGAG
AIGRGLPIRRAIGGEPLEAVQLQPCVSGEQWEWDGVRFSLWRWADARTSNDRSCVLLVEASGERLLLAGDMEAGAERAWL
AAMDSPRIDWLQSPHHGSRSSSSEAFIRAAAPRGVLISRGRNNSFGHPHAQVVERYRRHGMTLHDTAVEGALHLVLGVQG
KVEGMRSQRRFWRDARGG

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=505707 IYR97_RS07000 WP_088523030.1 1554476..1556692(+) (comA) [Pseudomonas fulva strain ZDHY316]
ATGCGCACAGGGATGTTGGCGCTTGCACTTGGTCTGCTCAGCCTCGGCCTGGTGCCTCAACTGCCATCGGTCGGATGGCT
GTTATTGCTTGCGGCGGGCGCTGTCGTCAGTCTGTTCACCCGCGGGTGGTTACTGGGCGTGTTCCTGCTGGGCTTTTGCT
GGGCTTGCTGGTCTGCCAAGCAGGCCATGGATGATCGTCTGGCGCCAGGGCTCGAGGGTCGCACGTTATGGCTGGAAGGG
CGCGTGGTCGGCCTGCCGGCGCGCACCGCGCAAGGCGTTCGCTTCGACCTTGAGGGGGCGCATTCCCGGCGTGCCGAATT
GCCGCAACGCCTGCAATTGAGCTGGTTTGACGGGCCACCGCTGCGTGCCGGCGAGCAGTGGCGCCTGGCCGTGACCCTGC
AGCGGCCGGGCGGGCTTTTGAACCCCCACGGGCCTGACCGGGAGGCGCAGTTGCTGGCACGCCGGGTCGGCGCCAGCGGA
ACGGTCAAAGCCGGGCAGTTACTGACGCCCGCGCCAGCCGGCTGGCGCGATGCGCTGCGCGAGCGGCTGCTGGCTGTCGA
GGCCAATGGTCGGCAAGCCGCGCTGGTGGCGCTGGTGCTTGGCGATGGGGCAGGCCTGGCACGCGAGGACTGGCAGGCGC
TACAGGCAACCGGCACCGTGCACCTGCTGGTGATTTCGGGCCAGCACATCGGTCTGGTGGCGGGTCTGCTCTACGCCGTG
GTCGCGTGGTTGGCCCGCTGGGGGCTGTGGCCGGCCCGGGTGCCGTGGCTGCCTTGGGCCTGTGCGCTGGCCATGAGTGC
GGCGCTGGCCTACGGCTGGCTGGCTGGGGCAGGGGTGCCAGTACAGCGCGCCTGTCTGATGCTGGCCGTGGTGCTGCTGT
GGCGGCTGCGCTTTCGTCATCTGGGTGCGTTTCACCCCTTGTTACTTGCGCTGGTTGCCGTACTGCTGTTCGAGCCATTG
GCAGCGCTGCTTCCAGGTTTCTGGTTGTCATTCGGCGCCGTGGCCACGCTCATCTACACCTTCAGTGCCCGGCTAGGGGC
TTGGCAACCCTGGCAGGCCTGGACGCGAGCGCAGTGGGTCATCGCCGTCGGGCTGCTCCCAGTGCTGCTGGCGGTGGGCT
TGCCGGTGAGCCTGAGTGCCCCGCTGGCCAACCTGGTGGCGGTGCCGTGGGTGAGCTTGGCGGTATTGCCGCTGGCGCTA
TTGGGCACCTTGTTGCTGCCCTTGGGAAGCGCAGGTGAGGCCTTGCTGTGGCTGGCAGGCGGCCTGCTGGATATCTTGTT
TCGCGCCTTGGCGCTGGTCGCCCAGCAGCGCCCGGCATGGGTGCCTCCCGCATTGCCGTTGTGGGCCTGGCTGCTGGTCT
GCCTGGGTGCACTGCTGCTGTTGCTGCCACGGGGTGTGCCGCTGCGTGGGTTGGGTGCGGTGATGCTCGTGGCGCTCTGG
GCACCTCGCGAGCCTGTCCCGGATGGCCAAGTCGAGGTGTGGCAGCTGGACGTGGGCCAAGGCTTGGCGGTGTTGCTGCG
TACCCGGCAGCACAGTCTGCTGTATGACGCAGGTCCAGCCAGGGGTGAAAGCGATCTGGGTGAACGGGTCGTGTTGCCCA
CCTTGCGCAAGTTGGGGGTCGACAGCCTGGATCTGCTGGTGGTCAGTCACGCCCATGCCGATCACGCCGGCGGTGCAGGT
GCAATCGGGCGCGGGCTGCCGATCAGGCGGGCGATTGGCGGTGAGCCGCTGGAAGCGGTTCAGTTACAGCCTTGCGTCAG
TGGCGAGCAGTGGGAGTGGGACGGCGTGCGCTTTTCCCTGTGGCGCTGGGCGGATGCGCGCACCAGCAATGACCGCTCCT
GCGTGTTGCTGGTCGAGGCGTCGGGCGAGCGTTTGCTGCTGGCCGGGGACATGGAGGCGGGGGCCGAACGTGCGTGGCTG
GCTGCCATGGACTCACCACGCATCGACTGGCTGCAGTCGCCTCACCACGGCAGCCGCAGTTCGTCGAGCGAAGCCTTCAT
CCGCGCTGCAGCCCCGCGTGGGGTACTGATATCCCGCGGGCGCAACAACAGCTTCGGGCATCCCCATGCACAGGTGGTCG
AACGCTATCGCAGGCATGGCATGACCCTTCACGACACGGCGGTGGAGGGGGCGTTGCATCTGGTGCTCGGTGTGCAAGGA
AAGGTCGAGGGTATGCGCAGCCAGCGCCGGTTCTGGCGTGACGCCAGGGGTGGTTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-677)

Domain of unknown function (DUF4131) (DUF4131)

(23-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

58.275

97.425

0.568
  comA Ralstonia pseudosolanacearum GMI1000

35.422

100

0.375