Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   SII_RS09470 Genome accession   NC_022237
Coordinates   1943633..1944730 (+) Length   365 a.a.
NCBI ID   WP_003075474.1    Uniprot ID   -
Organism   Streptococcus intermedius C270     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1938633..1949730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SII_RS09445 (SII_1852) pgsA 1939112..1939651 (-) 540 WP_003077406.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  SII_RS09450 (SII_1853) rodZ 1939662..1940474 (-) 813 WP_020999294.1 cytoskeleton protein RodZ -
  SII_RS09455 (SII_1854) yfmH 1940533..1941828 (-) 1296 WP_020999295.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  SII_RS09460 (SII_1855) yfmF 1941828..1943075 (-) 1248 WP_020999296.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  SII_RS09465 (SII_1856) yaaA 1943251..1943631 (+) 381 WP_003075472.1 S4 domain-containing protein YaaA -
  SII_RS09470 (SII_1857) recF 1943633..1944730 (+) 1098 WP_003075474.1 DNA replication/repair protein RecF Machinery gene
  SII_RS09475 (SII_1858) guaB 1945571..1947052 (-) 1482 WP_020999297.1 IMP dehydrogenase -
  SII_RS09480 (SII_1859) trpS 1947190..1948215 (-) 1026 WP_003075477.1 tryptophan--tRNA ligase -
  SII_RS09485 (SII_1860) galE 1948297..1949292 (-) 996 WP_020999298.1 UDP-glucose 4-epimerase GalE -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 42081.36 Da        Isoelectric Point: 8.4364

>NTDB_id=50570 SII_RS09470 WP_003075474.1 1943633..1944730(+) (recF) [Streptococcus intermedius C270]
MWLKNLQIQYFRNYKLTEIDFHPGLNIFLGENAQGKTNILEAIYFLALTRSHRTRSDKDLIYFSNDSLKISGQLAKETGN
ISLEIDLTPKGRTTKVNHLKQSKLSDYVGNMNVVLFAPEDLQLIKGTPALRRKFIDIELGQIKPIYLSDLSQYHHVLKQR
NAYLKAAPKIDETFLTVLDDQLVEFGCRVIQHRTEFLKKLEHFGQQKHLELSSNLENLTIKYCSSIPLSDPNKLKESFQI
ALRQSRSRDLFKKNTGIGPHRDDIAFYINNMNATFGSQGQHRSMVLSLKLAEIELMETVTKEKPILLLDDVMSELDNNRQ
LNLLETISQNIQTFITTTTLEHLKHLPSDIKIFSIHDGHFMENQV

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=50570 SII_RS09470 WP_003075474.1 1943633..1944730(+) (recF) [Streptococcus intermedius C270]
ATGTGGTTAAAAAACTTACAAATTCAATATTTTCGCAATTATAAATTAACTGAAATAGATTTTCACCCTGGTCTCAATAT
TTTTTTAGGGGAAAACGCTCAAGGAAAAACAAATATTTTAGAAGCTATCTATTTTCTTGCGTTGACACGAAGTCATCGAA
CTCGTTCAGATAAAGATTTAATTTATTTTTCTAACGATTCTTTAAAAATTTCTGGACAACTTGCCAAAGAAACTGGGAAT
ATCTCTTTAGAAATTGACTTGACCCCTAAAGGAAGAACTACAAAGGTTAATCATTTAAAACAAAGTAAATTATCCGATTA
TGTTGGAAATATGAATGTTGTTCTATTTGCTCCAGAAGATTTACAACTGATTAAAGGGACACCAGCTCTTAGACGGAAAT
TTATCGACATAGAATTAGGGCAAATTAAACCAATCTATTTATCTGATTTATCACAATATCATCATGTTTTAAAACAACGA
AATGCTTATCTAAAGGCAGCCCCAAAAATAGATGAGACTTTTTTAACTGTCTTGGATGATCAGCTAGTAGAGTTTGGTTG
CCGTGTTATACAACATCGGACAGAGTTTCTCAAAAAACTAGAACACTTTGGTCAACAAAAACATTTAGAGCTTTCAAGTA
ATTTAGAAAACTTAACCATTAAGTATTGCTCTTCTATTCCACTTTCAGATCCCAATAAATTGAAAGAATCTTTCCAAATT
GCATTAAGACAAAGCCGTAGTAGAGATTTATTTAAAAAAAATACTGGAATTGGTCCCCATCGAGATGATATCGCTTTTTA
TATTAATAACATGAATGCCACTTTTGGTAGTCAAGGACAACATCGAAGTATGGTCCTATCTCTTAAGTTGGCAGAGATTG
AACTTATGGAAACTGTGACCAAAGAAAAACCAATTCTTCTACTTGACGATGTTATGAGCGAACTTGACAACAATCGTCAA
TTGAATTTGCTTGAAACTATCTCTCAAAATATACAAACATTTATCACAACAACAACTTTAGAACATCTGAAACATTTGCC
TTCTGATATTAAAATTTTCTCAATTCATGATGGACATTTTATGGAAAATCAAGTGTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-356)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

72.346

98.082

0.71
  recF Bacillus subtilis subsp. subtilis str. 168

47.159

96.438

0.455

Multiple sequence alignment