Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   I1H34_RS24830 Genome accession   NZ_CP064923
Coordinates   5449305..5449685 (+) Length   126 a.a.
NCBI ID   WP_212663534.1    Uniprot ID   -
Organism   Acaryochloris marina S15     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5444305..5454685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I1H34_RS24815 (I1H34_24775) - 5445351..5445890 (+) 540 WP_212663531.1 hypothetical protein -
  I1H34_RS24820 (I1H34_24780) - 5445935..5446216 (+) 282 WP_212663532.1 hypothetical protein -
  I1H34_RS24825 (I1H34_24785) - 5446699..5448828 (+) 2130 WP_212663533.1 glycosyltransferase -
  I1H34_RS24830 (I1H34_24790) pilH 5449305..5449685 (+) 381 WP_212663534.1 response regulator transcription factor Machinery gene
  I1H34_RS24835 (I1H34_24795) - 5449703..5450188 (+) 486 WP_212663535.1 CYTH domain-containing protein -
  I1H34_RS24840 (I1H34_24800) - 5450267..5451100 (-) 834 WP_212663536.1 prohibitin family protein -
  I1H34_RS24845 (I1H34_24805) - 5451131..5452540 (-) 1410 WP_212663537.1 cell wall metabolism sensor histidine kinase WalK -
  I1H34_RS24850 (I1H34_24810) hemJ 5452555..5453124 (-) 570 WP_212663538.1 protoporphyrinogen oxidase HemJ -
  I1H34_RS24855 (I1H34_24815) msrA 5453401..5454057 (-) 657 WP_212663539.1 peptide-methionine (S)-S-oxide reductase MsrA -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 14259.58 Da        Isoelectric Point: 4.8947

>NTDB_id=505668 I1H34_RS24830 WP_212663534.1 5449305..5449685(+) (pilH) [Acaryochloris marina S15]
MTTVMVVDDSPTMRAMLTDMLQRNGLEVIEAEDGLAAKTMLQASSYPDLVITDIVMPRMNGYELCRWVKNDLTDRNLPVI
MCSTKGEAFDRHWGMKQGGDAYITKPFNPSEMLDLIRKLLKTRAES

Nucleotide


Download         Length: 381 bp        

>NTDB_id=505668 I1H34_RS24830 WP_212663534.1 5449305..5449685(+) (pilH) [Acaryochloris marina S15]
ATGACAACAGTAATGGTAGTTGATGACAGCCCCACCATGCGTGCCATGCTAACGGATATGTTACAGCGCAATGGTCTAGA
GGTCATTGAAGCTGAAGACGGCTTAGCAGCTAAAACAATGCTGCAGGCCAGTAGCTATCCAGACTTGGTGATCACAGATA
TTGTGATGCCTCGCATGAACGGCTATGAATTGTGCCGCTGGGTCAAAAATGACCTAACCGACCGCAACTTACCCGTGATT
ATGTGCTCTACCAAGGGTGAAGCATTTGATCGACATTGGGGCATGAAGCAAGGGGGAGACGCTTACATTACCAAACCCTT
TAACCCCTCAGAAATGCTCGATCTCATTCGTAAGCTACTCAAAACCCGGGCCGAGTCCTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

54.098

96.825

0.524
  pilG Acinetobacter baumannii strain A118

47.368

90.476

0.429