Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   I1H34_RS04420 Genome accession   NZ_CP064923
Coordinates   802221..802586 (-) Length   121 a.a.
NCBI ID   WP_010472888.1    Uniprot ID   B0CAH2
Organism   Acaryochloris marina S15     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 797221..807586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I1H34_RS04410 (I1H34_04410) - 798965..801493 (-) 2529 WP_212664525.1 HAMP domain-containing methyl-accepting chemotaxis protein -
  I1H34_RS04415 (I1H34_04415) - 801687..802214 (-) 528 WP_212664526.1 chemotaxis protein CheW -
  I1H34_RS04420 (I1H34_04420) pilH 802221..802586 (-) 366 WP_010472888.1 PleD family two-component system response regulator Machinery gene
  I1H34_RS04425 (I1H34_04425) hmpF 803143..804807 (+) 1665 WP_212664527.1 pilus motility taxis protein HmpF -
  I1H34_RS04430 (I1H34_04430) - 804872..805576 (-) 705 WP_212664528.1 uracil-DNA glycosylase family protein -
  I1H34_RS04435 (I1H34_04435) - 805668..806213 (-) 546 WP_212664529.1 GIY-YIG nuclease family protein -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13591.71 Da        Isoelectric Point: 4.3962

>NTDB_id=505653 I1H34_RS04420 WP_010472888.1 802221..802586(-) (pilH) [Acaryochloris marina S15]
MQKVLVVDDSITQRQLMSNALEDMGLTVLIATDGVEALEQIQSTQPDIVVLDIVMPRKNGYEVCREIKSNPTTQNVPVVI
CSSKTEDFDRYWGMKQGADAYLTKPIQPRELLVIVRQLLEG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=505653 I1H34_RS04420 WP_010472888.1 802221..802586(-) (pilH) [Acaryochloris marina S15]
ATGCAAAAAGTTTTAGTAGTTGATGACAGTATTACACAGCGACAACTCATGAGCAATGCTCTCGAAGACATGGGACTCAC
GGTTTTGATCGCAACAGACGGAGTAGAAGCGCTTGAGCAAATCCAATCAACGCAACCTGATATTGTGGTCCTAGATATCG
TCATGCCTCGAAAAAATGGGTATGAGGTTTGTCGCGAAATAAAGTCTAACCCAACAACTCAAAATGTACCAGTTGTAATT
TGTTCCTCAAAAACAGAAGACTTTGATCGGTACTGGGGGATGAAACAAGGGGCAGATGCTTATCTGACCAAGCCGATACA
ACCGCGAGAATTACTAGTCATAGTTAGGCAATTACTAGAAGGTTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B0CAH2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

63.866

98.347

0.628
  pilG Acinetobacter baumannii strain A118

46.087

95.041

0.438
  pilL-C Synechocystis sp. PCC 6803

40.336

98.347

0.397
  micA Streptococcus pneumoniae Cp1015

39.496

98.347

0.388
  vicR Streptococcus mutans UA159

36.975

98.347

0.364
  chpA Acinetobacter baumannii strain A118

37.931

95.868

0.364