Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   IYN96_RS05540 Genome accession   NZ_CP064871
Coordinates   1197338..1198789 (-) Length   483 a.a.
NCBI ID   WP_178385942.1    Uniprot ID   -
Organism   Xanthomonas oryzae pv. oryzicola strain YN01     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1192338..1203789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IYN96_RS05515 (IYN96_05505) - 1192586..1193215 (+) 630 WP_024711608.1 hypothetical protein -
  IYN96_RS05520 (IYN96_05510) - 1193185..1194711 (+) 1527 WP_047340101.1 membrane protein -
  IYN96_RS05525 (IYN96_05515) pilB 1194746..1196479 (+) 1734 WP_014504319.1 type IV-A pilus assembly ATPase PilB Machinery gene
  IYN96_RS05530 (IYN96_05520) - 1196488..1196997 (-) 510 WP_178385941.1 Fic family protein -
  IYN96_RS05535 (IYN96_05525) - 1197059..1197265 (-) 207 WP_076342549.1 YhfG family protein -
  IYN96_RS05540 (IYN96_05530) pilR 1197338..1198789 (-) 1452 WP_178385942.1 sigma-54 dependent transcriptional regulator Regulator
  IYN96_RS05545 (IYN96_05535) - 1199060..1200673 (-) 1614 WP_014504316.1 HAMP domain-containing sensor histidine kinase -
  IYN96_RS05550 (IYN96_05540) sucC 1200907..1202076 (+) 1170 WP_014504315.1 ADP-forming succinate--CoA ligase subunit beta -
  IYN96_RS05555 (IYN96_05545) sucD 1202101..1202976 (+) 876 WP_014504314.1 succinate--CoA ligase subunit alpha -
  IYN96_RS05560 (IYN96_05550) - 1203150..1203377 (+) 228 Protein_1056 hypothetical protein -

Sequence

Protein


Download         Length: 483 a.a.        Molecular weight: 52497.23 Da        Isoelectric Point: 6.8291

>NTDB_id=505488 IYN96_RS05540 WP_178385942.1 1197338..1198789(-) (pilR) [Xanthomonas oryzae pv. oryzicola strain YN01]
MRRAPLDNCRPSSRWAIVRSMSEPKSALVVDDERDIRELLVLTLSRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEIARQYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNHDRPAPPPPPEQASRL
LGDSSAMESLRATIGKVARSQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGA
HADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHRDLGELVSDGRFRHDLYYR
INVIELRVPPLRERGGDLPQLAAAIIARLAHSHGRPIPLLTQSALDALDHYGFPGNVRELENILERALALAEDDQISATD
LRLPAHGGHRLAATPGNAAVEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKL
GME

Nucleotide


Download         Length: 1452 bp        

>NTDB_id=505488 IYN96_RS05540 WP_178385942.1 1197338..1198789(-) (pilR) [Xanthomonas oryzae pv. oryzicola strain YN01]
TTGCGCCGCGCCCCGCTCGACAATTGTCGACCATCATCACGCTGGGCTATCGTGCGCAGCATGAGCGAACCCAAAAGTGC
CCTGGTTGTCGATGACGAGCGTGATATTCGCGAGTTGCTTGTTCTCACCTTGAGCCGTATGGGGCTGCGCATCAGCACCG
CTGCCAATCTGGCCGAAGCGCGCGAATTGCTGGCCAACAATCCCTACGATCTGTGCCTGACCGACATGCGCCTGCCCGAC
GGCAATGGCATCGAGCTGGTCACCGAAATCGCCAGGCAGTACCCGCAGACGCCGGTGGCGATGATCACCGCGTTCGGCAG
CATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAACCGGTGGACATCGGCGTGCTGCGCG
GCTTGGTCAAGCACGCGCTGGAATTGAACAACCACGACCGCCCAGCTCCGCCGCCGCCACCTGAACAGGCCAGCCGCCTG
CTCGGCGACTCCAGCGCGATGGAGAGCCTGCGCGCCACCATCGGCAAGGTGGCGCGCAGTCAGGCACCGGTCTACATCGT
CGGCGAATCCGGGGTGGGCAAGGAGCTGGTTGCACGCACCATCCACGAACAAGGCGCACGCGCCGCCGGCCCGTTCGTGC
CGGTCAACTGCGGCGCCATTCCCGCCGAGCTGATGGAAAGCGAATTCTTCGGCCACAAGAAAGGCAGCTTCACCGGCGCG
CATGCCGACAAGCCCGGGCTGTTCCAGGCCGCGCACGGCGGCACCTTGTTCCTGGACGAAGTGGCCGAATTGCCGTTGCA
GATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGTCCGGTCGGCGCCTCCGGCGAAACCCTGGTGGACG
TACGCATCCTGTCGGCCACCCACAGGGACCTGGGCGAGCTGGTCTCCGACGGCCGTTTTCGACACGATCTGTACTACCGC
ATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGCGGCGACTTGCCGCAGCTGGCCGCTGCCATCATCGC
GCGCCTGGCGCACAGCCACGGCCGCCCCATTCCACTGCTGACCCAATCCGCGCTCGACGCACTGGATCACTACGGCTTCC
CCGGCAACGTGCGCGAACTGGAAAACATCCTTGAACGCGCCCTGGCCCTGGCCGAAGACGACCAGATCAGCGCCACCGAC
CTGCGCCTGCCCGCCCACGGCGGCCACCGCCTCGCCGCCACACCCGGCAACGCCGCCGTGGAACCACGCGAAGCCGTCGT
CGACATCGACCCCGCCTCGGCCGCCCTACCCTCCTACATCGAACAACTGGAACGCGCCGCGATCCAGAAAGCGCTGGAAG
AAAACCGCTGGAACAAGACCAAGACCGCCGCGCAGTTGGGTATCACGTTTCGAGCGCTGCGTTACAAGCTCAAGAAGTTG
GGGATGGAGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(440-480)

Sigma-54 interaction domain (Sigma54_activat)

(161-326)

Response regulator receiver domain (Response_reg)

(28-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.203

95.652

0.605
  pilR Acinetobacter baumannii strain A118

48.701

95.652

0.466